Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq224 114 1e-20 >seq224 Length=84125 Score = 114 bits (126), Expect = 1e-20 Identities = 249/368 (68%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 79459 AGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCC 79518 || || | ||| || | || || || ||||| || || ||||| ||||| ||||||||| Sbjct 27580 AGATCCAAAAACTCAAAAATATCAGCATGCCATGGTTCAAGATACATGGCAAACGAACCC 27521 Query 79519 TTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATG 79578 || ||||| || || || |||| || || || || || | ||||| ||||| |||||| Sbjct 27520 TTACGCTTACCACCACCTTGGTCAACATAGCGAGCGGTATCATTGAATACTCGAAGCATG 27461 Query 79579 GGCACGATGCCG-TCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAAT 79637 || | ||| ||| ||| || ||| || || || || || | | ||||| Sbjct 27460 GGAATGATACCGTTCGATGA-GCCATTGGTACCACGAATATAACTATTTGTTGAGCGAAT 27402 Query 79638 GTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAG 79697 || | | | ||||| || || | ||| ||||| || || || | || | Sbjct 27401 ATTGTGGATATTCACGCCGATACCACCAGCCCATTTGGAAATACAAGCACATTGTTTCAA 27342 Query 79698 CGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACAT 79757 || || || || || || ||||| ||||||||||| || | || ||||| ||||| Sbjct 27341 AGTATCATAAATACCTTCAATCGAATCGTCCTTCATGGCCAAAAGAAAGCAAGACGACAA 27282 Query 79758 CTGTGG--GTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTT 79815 ||||| || | ||||| || ||||| || || || || || || ||||||||| || Sbjct 27281 TTGTGGACGTGG--AGTACCAGCATTGAAAAGAGTAGGTGTAGCATGGGTGAAGAACATT 27224 Query 79816 TGGCTCAT 79823 || ||||| Sbjct 27223 TGACTCAT 27216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548488233965520