Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq224 107 2e-18 seq2584 86.0 7e-12 >seq224 Length=84125 Score = 107 bits (118), Expect = 2e-18 Identities = 248/372 (67%), Gaps = 14/372 (4%) Strand=Plus/Plus Query 53258 ATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCAC 53317 ||||| |||| || ||| || || || || || || || ||||| |||||||| | Sbjct 27216 ATGAGTCAAATGTTCTTCACCCATGCTACACCTACTCTTTTCAATGCTGGTACTCCACGT 27275 Query 53318 CCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTAC 53377 || || ||||| ||||| || |||| |||||||| || ||||| || || || || Sbjct 27276 CCACAATTGTCGTCTTGCTTTCTTTTGGCCATGAAGGACGATTCGATTGAAGGTATTTAT 27335 Query 53378 GAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG------TATC 53431 || || | || | ||||| || ||||| ||| | ||||||||||| |||| Sbjct 27336 GATACTTTGAAACAATGTGCTTGTATTTCCAAATGGGCTGGTGGTATCGGCGTGAATATC 27395 Query 53432 CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG-A 53490 ||| || | || | | | || || || || ||| || || | Sbjct 27396 CAC------AATATTCGCTCAACAAATAGTTATATTCGTGGTACCAATGGC-TCATCGAA 27448 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || ||| | || ||||| || || ||||| | || || || || || |||| ||||| Sbjct 27449 CGGTATCATTCCCATGCTTCGAGTATTCAATGATACCGCTCGCTATGTTGACCAAGGTGG 27508 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||| ||||| ||||| ||||| ||||| || || || || ||||| || || ||| | || Sbjct 27509 TGGTAAGCGTAAGGGTTCGTTTGCCATGTATCTTGAACCATGGCATGCTGATATTTTTGA 27568 Query 53611 GTTTCTCGAGCT 53622 |||| | || || Sbjct 27569 GTTTTTGGATCT 27580 >seq2584 Length=5567 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 74456 CTTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTT 74515 ||| || || |||||||| |||||||| |||||||||||||| |||| | || || | Sbjct 2943 CTTCGAGTATTCACCGACACGCTTTTCGAAAAAGTTGGTCTTTCCTTGAAGAGATATCAT 3002 Query 74516 CTCCATCCAGTCGAAAGGGTTCTTTGCACCGTAAA 74550 |||||||||||||| || ||||| ||| ||||| Sbjct 3003 GTCCATCCAGTCGAATGGATTCTTGGCATTGTAAA 3037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547179521213400