Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq580 136 2e-27 seq419 120 2e-22 seq2232 100 2e-16 seq5008 91.5 9e-14 >seq580 Length=37562 Score = 136 bits (150), Expect = 2e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||||||||| ||||| |||||||| |||||||||||||| || || Sbjct 7810 GCCTCCACGAAGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCACT 7869 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||| || ||||||||||||||||||| || || || ||||| ||||| ||||| || Sbjct 7870 TAATGTACGACCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGAGG 7929 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTCTTCGCTCTCCA 34657 | || ||||||||| ||||||||| || | | || ||| | ||| || | Sbjct 7930 GATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTAT-CAATCGAGTCGGATGGTTCAA 7988 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||| || ||||| || || || ||||| ||||| || ||||| Sbjct 7989 CATCCAAGGTAATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 Score = 113 bits (124), Expect = 3e-20 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTGAAAGTGTTCGCTCGTCTT 34555 |||||||| || ||| |||||||||||||| |||| |||| |||| || | |||| Sbjct 8285 ACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTGAGAGTG--CGGCCATCTT 8342 Query 34556 CAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTG 34615 | |||||||| || ||||| || || || || ||||| || || | || ||||| ||| Sbjct 8343 CGAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTT 8402 Query 34616 TGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTT 34674 ||||||||||||| ||| || ||| | ||| || || |||| || || || Sbjct 8403 GGATCTTTTGTTTT-ACGTTATCAATCGAGTCCGAAGGTTCGACATCCAATGTAATTGTC 8461 Query 34675 TTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| || || ||||| ||||| Sbjct 8462 TTGCCGGTCAACGTCTTTACGAAAATTTGCAT 8493 Score = 91.5 bits (100), Expect = 9e-14 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 |||||| || | ||| ||||| ||||| |||||||| || || || | || | Sbjct 8050 ACGCAAGACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACTGAGAGAACGACC 8109 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 ||||| |||||||| || ||||| |||||||| ||||| || || || | || || || Sbjct 8110 ATCTTCGAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGGGATGCCTTCTTT 8169 Query 34611 GTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTA 34669 |||| ||||||||||| | | || ||||| |||| ||||| || | || | Sbjct 8170 GTCTTGAATCTTTTGTTTCACATTAT-CAATTGAGTCTGAAGGTTCCACGTCAAGTGTAA 8228 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || || || || ||||| ||||| Sbjct 8229 TAGTCTTTCCAGTCAATGTCTTGACGAAAATTTGCAT 8265 Score = 91.5 bits (100), Expect = 9e-14 Identities = 181/263 (69%), Gaps = 10/263 (4%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||||| | |||||||||||| || | || |||||||| || || || || | Sbjct 8495 CCGCCTCGTAAACGCAACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCACTA 8554 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | |||||| || ||||| || ||||| ||||| || || || Sbjct 8555 AGAGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 8614 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| |||| || ||| || ||| | ||| ||||| Sbjct 8615 ATACCTTCCTTGTCT-TGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGGTTCCAC 8673 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG--TTGA----- 34711 |||| || || || || ||||| | || || ||||| || |||||| |||| Sbjct 8674 GTCCAACGTAATTGTCTTTCCGGTGAGTGTCTTGACAAAGATTTGCATGACTTGAGCTTC 8733 Query 34712 TTGTA-TGACGTTGAAAAAGATC 34733 ||||| | | ||||||| |||| Sbjct 8734 TTGTAGTAAATTTGAAAATGATC 8756 >seq419 Length=23932 Score = 120 bits (132), Expect = 2e-22 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TG 34537 || || | ||||||||| |||||||| | || |||||||| ||||| || || | Sbjct 23512 CCACCACGAAGACGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTT 23453 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||||| || | ||||| ||||||||||||||||| || | || ||||| || || | Sbjct 23452 AAAGTA--CGGCCATCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAG 23395 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCC 34656 | | || ||||||||| ||||||||| |||||| || ||| | ||| || Sbjct 23394 GAATGCCTTCCTTGTCTTGGATCTTTTG-TTTAACATTATCAATGGAGTCCGAAGGTTCG 23336 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || | || ||||| |||||||| ||||| || |||||||| |||||| Sbjct 23335 ACGTCAAGTGTGATCGTCTTACCGGTCAACGTCTTTACAAAAATTTGCATG 23285 Score = 84.2 bits (92), Expect = 1e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || ||||| |||||||| ||||| || || ||| || || | |||||| Sbjct 23722 ACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCACTAAGGGTGCGGCCATCTTCA 23663 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||||||||| ||||| || | || ||||| || || || | || ||||||||| Sbjct 23662 AGTTGTTTACCAGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGA 23603 Query 34618 ATCTTTTGTTT 34628 |||||||| || Sbjct 23602 ATCTTTTGCTT 23592 >seq2232 Length=15861 Score = 100 bits (110), Expect = 2e-16 Identities = 167/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTG 34537 || || | |||||| | ||||| || | ||| |||||||||||||| |||| || Sbjct 622 CCACCACGAAGACGAAGGACCAAGTGCAAAGTCGATTCCTTTTGAATGTTGTAATCGCTC 563 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||| || || | ||||| ||||| || |||||||| || ||||| ||||| || || | Sbjct 562 AAA--GTACGACCATCTTCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAG 505 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | || |||||||| ||||||||| || ||| | ||| | ||| ||| Sbjct 504 GAATACCTTCCTTGTCCTGGATCTTTTG-CTTGACGTTGTCAATCGAGTCCGAAGGCTCT 446 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713 || |||| || || || || || || || || || || ||||||||||| ||| || Sbjct 445 ACATCCAACGTGATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCATATTGCTT 389 >seq5008 Length=14815 Score = 91.5 bits (100), Expect = 9e-14 Identities = 112/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TG 34537 || || | |||||| | |||||||| ||||| || ||||| ||||| ||||| | Sbjct 6448 CCACCACGAAGACGAAGGACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTC 6389 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||||| || | |||||||||||||| || ||||| || ||||| ||||| || || | Sbjct 6388 AAAGTA--CGTCCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAG 6331 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 | | || ||||||||| |||||||| || Sbjct 6330 GAATGCCTTCCTTGTCTTGAATCTTTTGCTT 6300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314709143854589