Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq419 96.9 2e-15 seq580 95.1 9e-15 seq2092 87.8 1e-12 seq5008 86.0 4e-12 >seq419 Length=23932 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || || | || || || || ||| |||| |||||| | Sbjct 23286 ATGCAAATTTTTGTAAAGACGTTGACCGGTAAGACGATCACACTTGACGTCGAACCTTCG 23345 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || |||||||| || ||||| ||||| |||| || | Sbjct 23346 GACTCCATTGATAAT--GTTAAACAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATC 23403 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | ||||||||||| |||||| | || || | || | || ||| |||| Sbjct 23404 AACAACGCCTCATTTTTGCCGGTAAACAACTCGAAGATGGCCGTACTTTAAGCGACTACA 23463 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || || ||||||||||| |||||| | ||||| || Sbjct 23464 ACATCCAAAAGGAATCTACATTGCATTTGGTCTTGCGTCTTCGTGGTGG 23512 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || ||| | || || || || ||| |||| |||||| | Sbjct 23058 ATGCAAATCTTTGTTAAGACTTTGACCGGTAAGACGATCACACTTGACGTCGAACCATCG 23117 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || |||||||| || || || ||||| |||| || | Sbjct 23118 GACTCCATCGACAAC--GTGAAACAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATC 23175 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | || ||||| || ||||| | || |||| ||| | ||| ||| |||| Sbjct 23176 AACAACGTCTTATCTTTGCTGGTAAACAGCTCGAAGACGGACGAACTTTGAGCGACTACA 23235 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | |||||||| || || ||||||||||| | ||||||||||| ||| Sbjct 23236 ATATCCAAAAGGAATCTACATTGCATTTGGTCCTCCGTTTGCGTGGTGGC 23285 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || || ||||| || || | ||||| || | Sbjct 22830 ATGCAAATCTTTGTCAAGACACTCACGGGGAAGACAATCACGCTCGATGTTGAGCCATCG 22889 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| ||||| || || || ||||| |||| || | Sbjct 22890 GACTCCATTGACAAC--GTCAAGCAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATC 22947 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | || ||||| || || ||| | || || | || | | || |||||||| Sbjct 22948 AACAACGTCTTATCTTTGCTGGCAAGCAACTCGAAGATGGTCGTACCCTGAGCGATTACA 23007 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | |||||||| || ||| |||||||||||| | ||||||||||| ||| Sbjct 23008 ATATCCAAAAGGAATCCACATTGCATTTGGTTCTTCGTTTGCGTGGTGGC 23057 >seq580 Length=37562 Score = 95.1 bits (104), Expect = 9e-15 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || || || || ||||| | || || ||| | Sbjct 8721 ATGCAAATCTTTGTCAAGACACTCACCGGAAAGACAATTACGTTGGACGTGGAACCTTCG 8662 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | || ||||| |||||||| ||||| |||||| |||| || | Sbjct 8661 GACTCGATTGATAAC--GTCAAGCAAAAAATTCAAGACAAGGAAGGTATTCCTCCAGATC 8604 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTT-GTCCGATTA 27965 | ||||| || || ||||| || ||||||||||| || | ||| | ||| || || || Sbjct 8603 AACAACGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGACGTACTCTTAGT--GACTA 8546 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| |||||||| || || ||||| ||||| |||||||| || ||||| Sbjct 8545 CAATATCCAAAAGGAATCGACCTTGCACTTGGTGTTGCGTTTACGAGGCGG 8495 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || || | || || || |||||| | ||||||||| | Sbjct 8493 ATGCAAATTTTCGTAAAGACGTTGACCGGCAAGACAATTACATTGGATGTCGAACCTTCG 8434 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | || || |||||||| || || || ||||| | || || | Sbjct 8433 GACTCGATTGATAAC--GTAAAACAAAAGATCCAAGATAAGGAAGGCATCCCACCAGACC 8376 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || |||||||| || |||||| | || || | |||| | ||||||| Sbjct 8375 AGCAACGATTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACTCTCAGTGATTACA 8316 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| || ||| | |||||||| | ||||||||||| || Sbjct 8315 ACATTCAAAAGGAATCCACACTTCATTTGGTCCTACGTTTGCGTGGTGG 8267 >seq2092 Length=13256 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || || | || || || || ||| | ||||||||| | Sbjct 11695 ATGCAGATCTTCGTAAAGACCTTGACGGGTAAGACCATCACATTGGATGTCGAACCTTCG 11754 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | ||| ||||| |||||||| ||||| ||||| |||| || | Sbjct 11755 GATTCGATTGATAAT--GTCAAGCAAAAAATTCAAGACAAGGAAGGCATTCCTCCAGATC 11812 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || || |||||||| || ||| | || || | |||| ||| |||||||| Sbjct 11813 AACAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCGATTACA 11872 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || |||||||| ||||| | || | ||||| || Sbjct 11873 ACATCCAAAAGGAATCGACTTTGCACTTGGTCCTTCGCCTTCGTGGTGG 11921 >seq5008 Length=14815 Score = 86.0 bits (94), Expect = 4e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 ||||| ||||| || ||||| ||||| |||| || || ||||| || || ||| Sbjct 6297 GTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAACAACGTTTGATCTTT 6356 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 || || |||||| | || || | ||| | ||| ||||||||||||||||||||| Sbjct 6357 GCAGGCAAACAACTTGAAGATGGACGTACTTTGAGCGATTACAACATCCAAAAAGAATCT 6416 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| | |||||||| | ||| | ||||| || Sbjct 6417 ACTCTTCATTTGGTCCTTCGTCTTCGTGGTGG 6448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355839270389691