Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq419 158 3e-33 seq5008 147 5e-30 seq2232 143 6e-29 seq2092 138 3e-27 seq580 131 4e-25 >seq419 Length=23932 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||||||| || || ||||||||||| || || |||||| | |||||| Sbjct 23725 AGGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCACTAAGGGTGCGGCCATCT 23666 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || || || || ||||||||||| || ||||||| ||||||||||| Sbjct 23665 TCAAGTTGTTTACCAGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 23606 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||||| || ||||| || |||| || || ||| || |||||||| || ||| Sbjct 23605 TGAATCTTTTGCTTGACGTTGTCAATGGAATCCGATGGTTCGACATCGAGAGTAATGGTC 23546 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | ||||| Sbjct 23545 TTACCCGTCAATGTCTTCACGAAGATTTGCAT 23514 Score = 152 bits (168), Expect = 1e-31 Identities = 154/198 (78%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 || || || |||||||| || || || | ||| | || | || ||||| ||||| || || Sbjct 23254 GTAGATTCCTTTTGGATATTGTAGTCGCTCAAAGTTCGT-CCGTCTTCGAGCTGTTTACC 23196 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || |||||||| |||||||| || ||||||| |||||||| || || ||||||||||| Sbjct 23195 AGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTTTGTTT 23136 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 |||||| ||||||| ||| || ||| || || || ||||||||||| || || | ||| Sbjct 23135 CACGTTGTCGATGGAGTCCGATGGTTCGACGTCAAGTGTGATCGTCTTACCGGTCAAAGT 23076 Query 211097 CTTTACAAACACCTGCAT 211114 ||| ||||| | ||||| Sbjct 23075 CTTAACAAAGATTTGCAT 23058 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || ||||||||||| || || | || | |||||||| || || || || Sbjct 23482 GTAGATTCCTTTTGGATGTTGTAGTCGCTTAAAGTACGGCCATCTTCGAGTTGTTTACCG 23423 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || ||||||||||| || ||||||| ||||||||||| |||||||||||||| Sbjct 23422 GCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTTTGTTTA 23363 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || || |||| ||| || ||| || || || ||||||||||| || || | ||| Sbjct 23362 ACATTATCAATGGAGTCCGAAGGTTCGACGTCAAGTGTGATCGTCTTACCGGTCAACGTC 23303 Query 211098 TTTACAAACACCTGCAT 211114 |||||||| | ||||| Sbjct 23302 TTTACAAAAATTTGCAT 23286 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983 || ||||||||||| || || || || | |||||||| || |||||||| || ||| Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 || || |||||||| ||||| |||| ||||||||||| ||||||||||| || || || Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 23813 Query 211044 TCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 || || | || || ||| || ||||| || || || || ||||| | ||||| ||| Sbjct 23812 TCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGACA 23753 Query 211104 AACACCTGCAT 211114 || | ||||| Sbjct 23752 AAGATTTGCAT 23742 >seq5008 Length=14815 Score = 147 bits (162), Expect = 5e-30 Identities = 168/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | ||||| | |||||||| || |||||||||||||| ||||| | ||| | Sbjct 6443 ACGAAGACGAAGGACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTCAAAG- 6385 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | ||||||||| || || |||||||| ||||| | |||||||| || ||||||| | Sbjct 6384 TACGTCCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGAATGC 6325 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||||||||| || |||||||| || || || || || | || || ||| || || | Sbjct 6324 CTTCCTTGTCTTGAATCTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCA 6265 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | ||||| || || | |||||| Sbjct 6264 ACGTGATGGTCTTGCCTGTCAATGTCTTGACGAAGATCTGCAT 6222 >seq2232 Length=15861 Score = 143 bits (158), Expect = 6e-29 Identities = 169/226 (75%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | ||||| | ||| | ||| || || ||||| ||||| ||||| | ||| | Sbjct 617 ACGAAGACGAAGGACCAAGTGCAAAGTCGATTCCTTTTGAATGTTGTAATCGCTCAAAG- 559 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | |||||||| || |||||||| || ||||| | |||||||| || ||||||| | Sbjct 558 TACGACCATCTTCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATAC 499 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||||||||||||||||||||| || ||||| || || | ||| || || || || | Sbjct 498 CTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCTACATCCA 439 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||||| || || | ||||| || || | |||||| || Sbjct 438 ACGTGATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCATATT 393 >seq2092 Length=13256 Score = 138 bits (152), Expect = 3e-27 Identities = 166/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | ||||| | ||| | ||| || || ||||||||||| ||||| | ||| | Sbjct 11916 ACGAAGGCGAAGGACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAATCGCTCAAAG- 11858 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | |||||||| || |||||||| || ||||| | |||||||| || ||||||| | Sbjct 11857 TGCGACCATCTTCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGC 11798 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||||||||| || || ||||| || || || || || | || || ||| || || | Sbjct 11797 CTTCCTTGTCTTGAATTTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCA 11738 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| | |||||||| || | |||||| Sbjct 11737 ATGTGATGGTCTTACCCGTCAAGGTCTTTACGAAGATCTGCAT 11695 >seq580 Length=37562 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || |||||||| || || || ||| || | ||||||||||| || ||||| Sbjct 8525 GTCGATTCCTTTTGGATATTGTAGTCACTAAGAGTACGTCCATCTTCCAATTGTTTGCCA 8584 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | |||||||| || ||||||| ||||||||||| || || ||||| || Sbjct 8585 GCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTTTGCTTG 8644 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || || | ||| || ||| || || | || || |||||||| ||||| ||| Sbjct 8645 ACGTTATCAATCGAGTCCGAAGGTTCCACGTCCAACGTAATTGTCTTTCCGGTGAGTGTC 8704 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 8705 TTGACAAAGATTTGCAT 8721 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 |||||| | ||||| ||||| || ||||| ||||| ||||| || || | ||||| Sbjct 8281 TAGGACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTGAGAGTGCGGCCATC 8340 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||| || || ||||| || || || | ||||| ||||| || || | |||||||| || Sbjct 8341 TTCGAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGGATGCCTTCCTTATC 8400 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 |||||||||||||| ||||| || || | ||| || ||| || || | || || || Sbjct 8401 TTGGATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACATCCAATGTAATTGT 8460 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || | |||||||| || | ||||| Sbjct 8461 CTTGCCGGTCAACGTCTTTACGAAAATTTGCAT 8493 Score = 113 bits (124), Expect = 1e-19 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | | || | ||| ||||| || || ||||| ||||| || || | Sbjct 7813 TCCACGAAGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCACTTAA 7872 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | || ||||| || || || || ||||| || | |||||||| || ||||| | Sbjct 7873 TGTACGACCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGAGGGAT 7932 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||||| ||||||||||| || || || || || | ||| || |||||| || Sbjct 7933 GCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTCAACATC 7992 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || || || |||||||| | ||| || ||||| | ||||| Sbjct 7993 CAAGGTAATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| || || ||||| || || || || ||||| || || || | | |||||||| Sbjct 8056 GACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACTGAGAGAACGACCATCTTC 8115 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || ||||| || || || | |||||||| || ||||| | ||||| ||||| || Sbjct 8116 GAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGGGATGCCTTCTTTGTCTTG 8175 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||||||||||| || || || | ||| || ||| || || || || || ||||| Sbjct 8176 AATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCCACGTCAAGTGTAATAGTCTT 8235 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || | ||||| || || | ||||| Sbjct 8236 TCCAGTCAATGTCTTGACGAAAATTTGCAT 8265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159072796230545