Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2092 138 8e-28 seq419 134 9e-27 seq2232 131 1e-25 seq5008 129 4e-25 seq580 125 5e-24 >seq2092 Length=13256 Score = 138 bits (152), Expect = 8e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | ||||| || || ||||| | || || || | || Sbjct 11695 ATGCAGATCTTCGTAAAGACCTTGACGGGTAAGACCATCACATTGGATGTCGAACCTTCG 11754 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || | |||| | | || ||||||||| ||||| ||||| | || ||||||||| Sbjct 11755 GATTCGATTGATAATGTCAAGCAAAAAATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 11814 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||||||||| ||||| ||||| | |||||||| ||||||||||| Sbjct 11815 CAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCGATTACAAC 11874 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| || || || || || || || Sbjct 11875 ATCCAAAAGGAATCGACTTTGCACTTGGT 11903 >seq419 Length=23932 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || |||||||| || || ||||| ||||| ||||| | || Sbjct 22830 ATGCAAATCTTTGTCAAGACACTCACGGGGAAGACAATCACGCTCGATGTTGAGCCATCG 22889 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | |||| | | || ||||| ||| || || ||||| | || ||||||||| Sbjct 22890 GACTCCATTGACAACGTCAAGCAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAA 22949 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| ||||| ||||| ||||| | || || | |||||||||| Sbjct 22950 CAACGTCTTATCTTTGCTGGCAAGCAACTCGAAGATGGTCGTACCCTGAGCGATTACAAT 23009 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || |||||||| ||||| ||| | | ||||| || || Sbjct 23010 ATCCAAAAGGAATCCACATTGCATTTGGTTCTTCGTTTGCGTGGTGG 23056 Score = 134 bits (148), Expect = 9e-27 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || | || || || |||||||| || || || || | || Sbjct 23286 ATGCAAATTTTTGTAAAGACGTTGACCGGTAAGACGATCACACTTGACGTCGAACCTTCG 23345 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | |||| ||| ||||| ||||| || ||||| ||||| | || |||||||| Sbjct 23346 GACTCCATTGATAATGTTAAA-CAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCA 23404 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || | || |||||||| |||||||| ||||| | || |||||| |||| ||||| Sbjct 23405 ACAACGCCTCATTTTTGCCGGTAAACAACTCGAAGATGGCCGTACTTTAAGCGACTACAA 23464 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| ||||| || || ||||| ||||| || || Sbjct 23465 CATCCAAAAGGAATCTACATTGCATTTGGTCTT 23497 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| || | || || || |||||||| || || || || | || Sbjct 23058 ATGCAAATCTTTGTTAAGACTTTGACCGGTAAGACGATCACACTTGACGTCGAACCATCG 23117 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | | || | | |||||||| ||| || || ||||| | || ||||||||| Sbjct 23118 GACTCCATCGACAACGTGAAACAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAA 23177 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || ||||| || ||||||| ||| ||||| |||| ||||| Sbjct 23178 CAACGTCTTATCTTTGCTGGTAAACAGCTCGAAGACGGACGAACTTTGAGCGACTACAAT 23237 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || ||||| ||||| || | | ||||| || || Sbjct 23238 ATCCAAAAGGAATCTACATTGCATTTGGTCCTCCGTTTGCGTGGTGG 23284 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | ||||| ||||| || || ||||| || || | || Sbjct 23742 ATGCAAATCTTTGTCAAGACATTGACGGGTAAAACCATTACCCTCGATGTCGAACCTTCG 23801 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || ||||| || ||||| ||||| | || || |||||| Sbjct 23802 GATTCTATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCACCTGATCAA 23861 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||||||||| ||||| ||||| | |||||| | |||| |||||| Sbjct 23862 CAACGTCTCATCTTTGCCGGCAAGCAACTCGAAGATGGCCGCACTCTCAGCGACTACAAC 23921 Query 23791 ATACAAAAAGA 23801 || ||||| || Sbjct 23922 ATCCAAAAGGA 23932 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || | ||||| || || || |||||||| || || | || Sbjct 23514 ATGCAAATCTTCGTGAAGACATTGACGGGTAAGACCATTACTCTCGATGTCGAACCATCG 23573 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || | |||| | | || ||||| ||| ||||| ||||| | || ||||||||| Sbjct 23574 GATTCCATTGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 23633 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || ||||| || |||||||| ||||| | ||||| | | || |||||| Sbjct 23634 CAACGCCTCATTTTTGCTGGTAAACAACTTGAAGATGGCCGCACCCTTAGTGACTACAAC 23693 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 23694 ATCCAAAAGGAATCGAC 23710 >seq2232 Length=15861 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || || | || || || || ||||| | || || || | Sbjct 393 AATATGCAGATTTTCGTCAAGACATTGACTGGCAAGACCATCACGTTGGATGTAGAGCCT 452 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||| | |||| | | || ||||| || ||||| |||||| | || |||||| Sbjct 453 TCGGACTCGATTGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATTCCTCCAGAT 512 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||||| || ||||||||||| ||||| ||||| | || ||||| |||||||| Sbjct 513 CAACAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGTACTTTGAGCGATTAC 572 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| ||||| || || || || || || || Sbjct 573 AACATTCAAAAGGAATCGACTTTGCACTTGGT 604 >seq5008 Length=14815 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || || ||||| | || || || | || Sbjct 6222 ATGCAGATCTTCGTCAAGACATTGACAGGCAAGACCATCACGTTGGATGTCGAACCTTCG 6281 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || | |||| | | || ||||| ||| ||||| ||||| | || ||||||||| Sbjct 6282 GATTCGATTGATAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 6341 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| ||||||||||| ||||| | ||| ||||| ||||||||||| Sbjct 6342 CAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGACGTACTTTGAGCGATTACAAC 6401 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || |||||||| || || | ||||| || Sbjct 6402 ATCCAAAAAGAATCTACTCTTCATTTGGT 6430 >seq580 Length=37562 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || ||||| ||||| || || || | || || || | || Sbjct 8721 ATGCAAATCTTTGTCAAGACACTCACCGGAAAGACAATTACGTTGGACGTGGAACCTTCG 8662 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | |||| | | || ||||||||| ||||| |||||| | || ||||||||| Sbjct 8661 GACTCGATTGATAACGTCAAGCAAAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 8602 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| ||||||||| ||||||| | ||| ||| | | || ||||| Sbjct 8601 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGACGTACTCTTAGTGACTACAAT 8542 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || || || || || || || | || ||||| || Sbjct 8541 ATCCAAAAGGAATCGACCTTGCACTTGGTGTTGCGTTTACGAGGCGG 8495 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || | || ||||| || || || || || || || | | Sbjct 8265 ATGCAAATTTTCGTCAAGACATTGACTGGAAAGACTATTACACTTGACGTGGAACCTTCA 8206 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | |||| | | |||||||| ||| ||||||||||| | || ||||||||| Sbjct 8205 GACTCAATTGATAATGTGAAACAAAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 8146 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || |||||||| ||||| ||||||||||| ||||| | || || | | || |||||| Sbjct 8145 CAACGTTTAATTTTTGCTGGCAAACAACTCGAAGATGGTCGTTCTCTCAGTGACTACAAC 8086 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || || || || ||||| |||| || Sbjct 8085 ATTCAGAAGGAATCTACTCTACATCTAGTCTT 8054 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || | || || || || || || | || || || | || Sbjct 8493 ATGCAAATTTTCGTAAAGACGTTGACCGGCAAGACAATTACATTGGATGTCGAACCTTCG 8434 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | |||| | |||||||||| || || || ||||| | || ||||| || Sbjct 8433 GACTCGATTGATAACGTAAAACAAAAGATCCAAGATAAGGAAGGCATCCCACCAGACCAG 8374 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || ||||| ||||||||||| ||||| | |||||| | | ||||||||| Sbjct 8373 CAACGATTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACTCTCAGTGATTACAAC 8314 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || |||||| | ||||| || || | ||||| || || Sbjct 8313 ATTCAAAAGGAATCCACACTTCATTTGGTCCTACGTTTGCGTGGTGG 8267 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | ||||||||||| || || | || ||||| | | Sbjct 8037 ATGCAAATCTTTGTCAAAACTTTGACGGGAAAAACCATTACCTTGGATGTTGAACCATCC 7978 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | |||| | | || ||||| || ||||| ||||| | || || |||||| Sbjct 7977 GACTCGATTGATAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCGGATCAA 7918 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || || || || |||||||| ||||||| || || ||| | || |||||| Sbjct 7917 CAACGTTTGATTTTCGCTGGTAAACAACTTGAAGACGGTCGTACATTAAGTGACTACAAC 7858 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 7857 ATTCAAAAGGAATCTAC 7841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337987630749164