Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq419 170 5e-37 seq5008 167 6e-36 seq2232 163 7e-35 seq2092 161 2e-34 seq580 143 6e-29 seq1556 107 5e-18 seq2670 100 7e-16 seq4831 96.9 8e-15 >seq419 Length=23932 Score = 170 bits (188), Expect = 5e-37 Identities = 156/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||||| |||||| ||| |||||||| || ||||| ||||| || ||| Sbjct 23254 GTAGATTCCTTTTGGATATTGTAGTCGCTCAAAGTTCGTCCGTCTTCGAGCTGTTTACCA 23195 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || |||||||| |||||||| || || ||||| |||||||| ||||| |||||||| ||| Sbjct 23194 GCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTTTGTTTC 23135 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||||||| ||| || | ||| ||||| | ||||||||||| || |||||||| Sbjct 23134 ACGTTGTCGATGGAGTCCGATGGTTCGACGTCAAGTGTGATCGTCTTACCGGTCAAAGTC 23075 Query 225697 TTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 23074 TTAACAAAGATTTGCAT 23058 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||| | || | || ||||| ||||||| ||||| ||| ||||| Sbjct 23507 ACGAAGACGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTTAAAGT 23448 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || || || || || || || || |||||||| || || ||||| || Sbjct 23447 ACGGCCATCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCC 23388 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||||||| || ||| || |||| ||| || | ||| ||||| | Sbjct 23387 TTCCTTGTCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACGTCAAG 23328 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || ||||| || |||| || | |||||| Sbjct 23327 TGTGATCGTCTTACCGGTCAACGTCTTTACAAAAATTTGCAT 23286 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||| ||||||| |||||||||| || || | |||||||| || ||||| ||| Sbjct 23026 GTGGATTCCTTTTGGATATTGTAATCGCTCAGGGTACGACCATCTTCGAGTTGCTTGCCA 22967 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || |||||||| |||||||| || || ||||| |||||||| ||||| ||||||||||| Sbjct 22966 GCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTTTGCTTG 22907 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || || |||| ||| || | || || || | |||||| ||||| ||||| | || Sbjct 22906 ACGTTGTCAATGGAGTCCGATGGCTCAACATCGAGCGTGATTGTCTTCCCCGTGAGTGTC 22847 Query 225697 TTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 22846 TTGACAAAGATTTGCAT 22830 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| ||||| ||||| ||||||| ||||| || | || | |||||| Sbjct 23725 AGGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCACTAAGGGTGCGGCCATCT 23666 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||| || || || |||||||| || || ||||| |||||||||||| Sbjct 23665 TCAAGTTGTTTACCAGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 23606 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||||||||| || || |||| || || | ||| || || | || || ||| Sbjct 23605 TGAATCTTTTGCTTGACGTTGTCAATGGAATCCGATGGTTCGACATCGAGAGTAATGGTC 23546 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| || || | ||| | |||||| Sbjct 23545 TTACCCGTCAATGTCTTCACGAAGATTTGCAT 23514 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225523 TCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAG 225582 || ||||||| ||||| ||| | ||| | |||||||| || ||||| || || ||| Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCT 225642 || || |||||||| || || ||||| |||||||||||||||||||||||||| ||| Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 23813 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATG 225702 || || | || || | ||| || || | || || || || |||||||| || || | Sbjct 23812 TCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGACA 23753 Query 225703 AACACTTGCAT 225713 || | |||||| Sbjct 23752 AAGATTTGCAT 23742 >seq5008 Length=14815 Score = 167 bits (184), Expect = 6e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | || ||||| ||||||||||||| ||||||||| |||||| Sbjct 6443 ACGAAGACGAAGGACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTCAAAGT 6384 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || || || || || ||||| | |||||||| || || ||||| || Sbjct 6383 ACGTCCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCC 6324 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||||||||| ||| || || | || || | ||| || || || Sbjct 6323 TTCCTTGTCTTGAATCTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAA 6264 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||||||| ||||| || || | ||| | ||||| Sbjct 6263 CGTGATGGTCTTGCCTGTCAATGTCTTGACGAAGATCTGCAT 6222 >seq2232 Length=15861 Score = 163 bits (180), Expect = 7e-35 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||| | ||| ||||| ||||| | ||||||||| |||||| Sbjct 617 ACGAAGACGAAGGACCAAGTGCAAAGTCGATTCCTTTTGAATGTTGTAATCGCTCAAAGT 558 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| || || ||||| | |||||||| || || |||||||| Sbjct 557 ACGACCATCTTCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACC 498 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||||||||| || || || | ||| || | || || || || Sbjct 497 TTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCTACATCCAA 438 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||||||| ||||| || || | ||| | ||||| || Sbjct 437 CGTGATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCATATT 393 >seq2092 Length=13256 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||| | ||| ||||| ||||||| ||||||||| |||||| Sbjct 11916 ACGAAGGCGAAGGACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAATCGCTCAAAGT 11857 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| || || ||||| | |||||||| || || ||||| || Sbjct 11856 GCGACCATCTTCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCC 11797 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| || |||||||| ||| || || | || || | ||| || || || Sbjct 11796 TTCCTTGTCTTGAATTTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAA 11737 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| |||||||| || |||| ||| | ||||| Sbjct 11736 TGTGATGGTCTTACCCGTCAAGGTCTTTACGAAGATCTGCAT 11695 >seq580 Length=37562 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||||||||| ||||| ||||| | ||||| || || || Sbjct 7816 ACGAAGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCACTTAATGT 7875 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || || || |||||||| || | |||||||| || || || || || Sbjct 7876 ACGACCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGAGGGATGCC 7935 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||||||||| ||| || || | ||| || | ||| || || || Sbjct 7936 TTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTCAACATCCAA 7995 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || |||||||||||||| | || | |||||| Sbjct 7996 GGTAATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | || || |||||||| ||||| | |||||||| | ||| | |||||| Sbjct 8282 AGGACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTGAGAGTGCGGCCATCT 8341 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||| || || | |||||| ||||| || || || |||||||| ||| Sbjct 8342 TCGAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCT 8401 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||||| || || || || | ||| || | ||| || || || || || ||| Sbjct 8402 TGGATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACATCCAATGTAATTGTC 8461 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || |||| ||| | |||||| Sbjct 8462 TTGCCGGTCAACGTCTTTACGAAAATTTGCAT 8493 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||||| |||||| || | ||| | |||||||| | || || ||| Sbjct 8525 GTCGATTCCTTTTGGATATTGTAGTCACTAAGAGTACGTCCATCTTCCAATTGTTTGCCA 8584 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | |||||||| || || |||||||||||||||||||| || |||||||| Sbjct 8585 GCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTTTGCTTG 8644 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || || || | ||| || | ||||||||| ||||| || ||||| || || | || Sbjct 8645 ACGTTATCAATCGAGTCCGAAGGTTCCACGTCCAACGTAATTGTCTTTCCGGTGAGTGTC 8704 Query 225697 TTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 8705 TTGACAAAGATTTGCAT 8721 >seq1556 Length=501 Score = 107 bits (118), Expect = 5e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || || ||||| || || |||||||||||||| ||||| Sbjct 306 GAAAATTTGACCATCAGTAATTGAAATTACATTAGTTGGAATATAAGCAGAAACGTCACC 247 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAA 4576 ||||| ||||| | || ||||| || |||| ||| || ||||||| Sbjct 246 AGCTTGAGTTTCAATTACTGGTAATGCAGTTAATGAACCCCCACCAA 200 >seq2670 Length=5650 Score = 100 bits (110), Expect = 7e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTG 372682 ||||| ||||||| | |||| ||||||||||| |||||||||||||||| ||||| | | Sbjct 2266 AGGTGGCACAGAATTGGGGGTTGCGACTGTTTAATAAAAACACAGGACTCTGCTAAATCG 2325 Query 372683 TAAAACGATGTATAGGGTCTGACAC 372707 ||| | || |||||||||||||||| Sbjct 2326 TAAGATGACGTATAGGGTCTGACAC 2350 >seq4831 Length=17254 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| || || |||||| |||| | ||| ||||| ||| |||| |||||| Sbjct 11389 AGAACAAGGTGTAGCGTTGATTCTCTTTGAATATTATAATCCCGCAATGTTCGTCCATCT 11448 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||| || || ||||| || || ||||| ||| || || ||||| ||||| || ||| Sbjct 11449 TCTAGTTGTTTGCCAGCAAATATGAGTCGCATTTGATCAGGAGGAATGCCTTCTTTTTCT 11508 Query 225622 TGGATC 225627 |||||| Sbjct 11509 TGGATC 11514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192449715461102