Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq580 89.7 4e-13 seq419 87.8 1e-12 >seq580 Length=37562 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 |||||||| || | ||||||| |||||| || ||||| ||||| |||||||| || Sbjct 8495 CCGCCTCGTAAACGCAACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCACTA 8554 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| |||||||||||||||||| ||| | || | | |||||| ||| || Sbjct 8555 AGAGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 8614 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCAC 101163 | ||||| ||||| ||||||||| || || Sbjct 8615 ATACCTTCCTTGTCTTGAATTTTTTGCTTGAC 8646 >seq419 Length=23932 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/235 (68%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| || ||||| | | |||| ||||| || ||||| ||||| |||||||| ||| Sbjct 23286 TGCCACCACGCAAACGGAGGACCAAATGCAATGTAGATTCCTTTTGGATATTGTAGTCGC 23227 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 || |||| ||||| | ||||| || ||| | ||||| | |||||| ||| | Sbjct 23226 TCAAAGTTCGTCCGTCTTCGAGCTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAG 23167 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189 | | |||||| || || ||| ||||||||||| | | | | | || || || Sbjct 23166 GAATGCCTTCCTTATCTTGAATCTTTTGTTTCACGTTGTCGATGGAGTC------CGATG 23113 Query 101190 TTTCGACG------GTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||||||| || || || || || ||||| || |||| ||| |||||||| Sbjct 23112 GTTCGACGTCAAGTGTGATCGTCTTACCGGTCAAAGTCTTAACAAAGATTTGCAT 23058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409634173712247