Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2584 235 5e-57 >seq2584 Length=5567 Score = 235 bits (260), Expect = 5e-57 Identities = 408/588 (69%), Gaps = 4/588 (1%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| |||||||| | ||| || || | ||| |||||||| ||||| |||| Sbjct 3235 CAGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAAAGCTTAAA 3294 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| ||||| | || || |||||||| || | | |||||| || |||||||| Sbjct 3295 CCAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCGAGCAAAATGATCCTGAAAAGAAA 3354 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTT 4726 || ||||| || || ||||| ||||| | || | ||| ||| |||| | || Sbjct 3355 ATACCTTCAACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAAT-TTTGCCATT 3413 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 |||||| | ||||| |||||||| | || || ||||| || | ||||| | Sbjct 3414 GCACCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCAATAGCCCT 3473 Query 4787 AAATAATTTA-CTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 || | | |||||| || | | ||||| ||||||| || || || | ||| | Sbjct 3474 CAAAACACGATCTTTTTCCACAATGTCCTTGA-TATAAGTATCAATGAGCAACGAATAAA 3532 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 ||| ||||| |||||||| |||||||| |||||||| ||||| ||||||||||| | || Sbjct 3533 CTTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGCTTCAGGTA 3592 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 |||| ||||| || |||| | | || ||||| ||||| ||||| || |||| Sbjct 3593 CTTGTACTTCATTGGAAAAATTCATGGCCAAATTTTCATTTACAATACCATCCGATGCTG 3652 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGT 5025 ||||||| ||||| ||||| | |||||| | |||| | | |||||||| |||| | Sbjct 3653 CAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAAGTTTTGTCCAAT 3712 Query 5026 GGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTT 5085 || ||| | | ||| | |||||| |||||||||| ||||| ||||| | Sbjct 3713 CTTTCATATCATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGCTTCAGCTTTCT 3772 Query 5086 TGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATC 5133 | ||||| ||| | ||| | | ||||| |||| | ||||||| Sbjct 3773 TATACATTTCCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAATC 3820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427021843510889