Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq224 399 3e-106 seq2584 275 9e-69 >seq224 Length=84125 Score = 399 bits (442), Expect = 3e-106 Identities = 1210/1844 (66%), Gaps = 55/1844 (3%) Strand=Plus/Minus Query 76811 TGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCT 76870 || |||||| |||||||| || || || || || | |||| |||| |||||||| Sbjct 28859 TGAACGTAGGTAGTACATGCCTGTCTTAAGTCCACGTTTCCAAGCGTAAAAATGCATCGA 28800 Query 76871 TGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGAT 76930 || |||||| ||| |||||||| ||||| | ||||||||| || |||| ||| Sbjct 28799 GGTGAGTTTGCTCACACTTGGATCGGCAATATGGACATTCATCGATTGCGATTGACAGAT 28740 Query 76931 GAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGT 76990 || || || | |||||| || | | || ||| ||||||| || |||||| | || Sbjct 28739 AAATGCACCACGATCAGCAGCAAGATCTAAAATAATCTTTTGCTTAACTTCCCATACTGT 28680 Query 76991 TTTGAAAACTTGTTTGATATCATCTGGAAGGTTTG-TA--TTTTGAATGGAACCACCATC 77047 ||| ||| | ||||||| | ||||| || || ||||||| ||||| ||| Sbjct 28679 CTTGTAAATGTCTTTGATACGTTTTGGAATACTTAATACGTTTTGAACACTACCACGATC 28620 Query 77048 TGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAA---CTCT 77104 || |||| ||| || ||| ||||||| | | | | || || || | Sbjct 28619 ATGTAAAATTTGATTACGTACTTCAGCATTCCAAAGA---CCCAAAGATATAAGTTCTTT 28563 Query 77105 AAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATT 77164 | | || || || ||| |||||| |||| | || | ||||| ||| || || Sbjct 28562 CATCAAATATTTGTTGACAATTGTAAATTCACCAGCAAGAACACGACGAGAGTACATGTT 28503 Query 77165 ACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGG 77224 ||| ||||||| | ||||||||||| || | |||||| ||||||||||| ||||| Sbjct 28502 GGATGTAAATGGTTCAATTGATTCATTGTTGCCAAGAATTTGTGCAGTAGAAGCTGTTGG 28443 Query 77225 CATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATA 77284 ||| || || | ||| | | ||| | | |||||| | | || | |||| || Sbjct 28442 CATTGGGGCAAGCAAAAGAGAATTGCGAATACCATGCTTGGCCACTTGAGCTTTGAGTGT 28383 Query 77285 TTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTT 77344 ||| |||||||||| || || |||| |||| | ||| ||||| | || || || Sbjct 28382 AGCCCAGTCCCAAAGATTTGTTGGAGAAACACCCCACATATCATATTGGAAGATACCTTT 28323 Query 77345 ACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACT 77404 || || || || ||| ||||| || || || | || || | ||| Sbjct 28322 GCTTACAGGAGAGCCTGCATACGTTTCGTATGGACCAAATTCTTTGGCAATTTCCATGGA 28263 Query 77405 CGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTT 77463 | ||||| | | | | ||||| ||||| || || | ||||||| | |||| |||| Sbjct 28262 TGTTTCCATGGATGCATGGTAAATAGTTTCAAAGATTTGAATATTGAGTTTCTTG-GCTT 28204 Query 77464 CAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAA 77523 || | ||||| |||||| | |||||||||||||| || | || ||||| |||| Sbjct 28203 CAGCAGATTCAAAAGGATAACCCATGAGAATAAAGGCATCAGCAAGCCCTTGAACACCAA 28144 Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 |||||||||| | ||| | | ||||| |||||||||| |||||| || || || | Sbjct 28143 TACCAATAGGACGATGACGCATATTGCTTCGTTTAGCTTCTTCAATAGGGTAGTAGTTGA 28084 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 | || || | ||| || | ||| | | ||| | ||| | | | | || || Sbjct 28083 TTTCAATCACTTTGTTTAAATTGCGAGTAACAATTTTGGTGATTTTATGCAAATTGGTAA 28024 Query 77644 AATCAAATCTTCCATCTATAACAAACATGTTCAAAG--CTATAGATGCTAGATTACAAAC 77701 | |||||| ||||| | ||||| | || |||| | || ||||| | ||| || || Sbjct 28023 AGTCAAATACACCATCATTGACAAA--TTTTGAAAGAGCAATCGATGCCAAATTGCACAC 27966 Query 77702 TGCTACCTCATTAGCGTTGGCATATTGTATTA--TCTCGGTACATAGATTACTACATTTG 77759 || || |||| | | | ||||| || | || | | ||| || ||||| |||| Sbjct 27965 AGCCACTTCATCTTTGCTTGTATATTCGATAACTTCACAGCACA-AG-TTACTCGATTTA 27908 Query 77760 ATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAAC 77819 ||||| || | ||||||||||| || |||||| | || || || | ||| | Sbjct 27907 ATAGTACCTAAGTTTTGTTGGTTCGATTTGGAATTGCAAGCATCTTTGTACAACATATAT 27848 Query 77820 GGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATC 77879 || || || ||||| || || || |||| ||| | || || | | ||| | | Sbjct 27847 GGTGTACCAGTTTCGATTTGAGAATCGAGAATGG-----CAAACCATAATTGCTG--AGC 27795 Query 77880 ATAGATT-TGTATCG-------CCTCTCTCTTTCATATT--GAGTATATAGCCGTTCAAA 77929 | |||| | | ||| ||| || |||| ||| | ||| | ||| |||||| Sbjct 27794 CTTGATTGTCTTTCGAGCACGACCT-TCAGATTCAAATTTGGTGTACAAAGC--TTCAAA 27738 Query 77930 TTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC--CAG 77987 ||| | ||||| ||| | ||| |||| |||||||||||| | || ||| || Sbjct 27737 TTCCTTGCCCCAGCAATCTTGCAAGCCAGAAGCTTCATTTGGGCAAA--AAAGACTCCAA 27680 Query 77988 TCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 78047 ||||||| | | | || || |||||||| | |||||| ||||| | ||| ||| ||| Sbjct 27679 TCACCATTTGCTTCGACACGCTTCATAAACAAATCAGGGATCCACAAGGCATAAAAGAGA 27620 Query 78048 TCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATA 78107 || || | | ||| |||||| || ||| || || ||||| | |||||| | |||| Sbjct 27619 TCACGAGCACGGTGTAGTTCATTGCCATGATTTTTCTTGAGATCCAAAAACTCAAAAATA 27560 Query 78108 TCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGA 78167 |||| |||||||||||| ||||| || || | || || ||| ||| || || Sbjct 27559 TCAGCATGCCATGGTTCAAGATACATGGCAAACGAACCCTTACGCTTACCACCACCTTGG 27500 Query 78168 TCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTT 78227 || | ||| | ||||| | ||| | |||| | ||| ||||| |||||||| |||| Sbjct 27499 TCAACATAGCGAGCGGTATCATTGAATACTCGAAGCATGGGAATGATACCGTTCGATGAG 27440 Query 78228 CCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----CCC 78283 ||||| || ||| ||||||||| ||| ||||||||| ||||||| || Sbjct 27439 CCATTGGTACCACGAATATAACTATTTGTTGAGCGAATATT----GTGGATATTCACGCC 27384 Query 78284 TATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTC 78343 || || || ||| || || || ||| || ||||||| ||||| || ||||| || Sbjct 27383 GATACCACCAGCCCATTTGGAAATACAAGCACATTGTTTCAAAGTATCATAAATACCTTC 27324 Query 78344 TATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403 || || ||| ||||| | |||||| || |||| ||| || | ||| || Sbjct 27323 AATCGAATCGTCCTTCATGGCCAAAAGAAAGCAAGACGACAATTGTGGACGTGGAGTACC 27264 Query 78404 TGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCA-GAAAGTAGATTGTATG 78462 ||||| || | || || | ||||| || || | ||| | | ||| | || | Sbjct 27263 AGCATTGAAAAGAGTAGGTGTAGCATGGGTGAAGAACATTTGACTCATGTA-TTCATAAG 27205 Query 78463 TTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATAT 78522 | || | |||| | || || || |||||| || || || |||||||| | ||| | Sbjct 27204 TGTCCAAAGCTCCAGCAATATCTTCTTTATGAATACCAACAGCAACACGCATGATCATGT 27145 Query 78523 GCTGAGGTCTTTCAACCGTCTTAT-TATTTATTTTCAACAAGTATGATTTTTCCAAAGTT 78581 ||||||||| ||| || ||| | ||||| || | ||| || |||||||||||| Sbjct 27144 GCTGAGGTCGTTC-ACAAACTTTTCCATTTACTTGAAGCAAATAGCTCTTTTCCAAAGTT 27086 Query 78582 TTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| ||||| || | ||| ||| || | || ||||||| Sbjct 27085 TTAAATCCAAAGTAATCATATTCAAAATCACGATCAGAAATAAT 27042 >seq2584 Length=5567 Score = 275 bits (304), Expect = 9e-69 Identities = 603/893 (68%), Gaps = 23/893 (3%) Strand=Plus/Plus Query 47856 TATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATA 47915 |||||||| ||||| || |||||||| || || || |||| | ||||| | ||||| Sbjct 2950 TATTCACCGACACGCTTTTCGAAAAAGTTGGTCTTTCCTTGAAGAGATATCATGTCCATC 3009 Query 47916 AAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTA 47975 | || |||||||| ||||| |||| || || ||| | || | || | | Sbjct 3010 CAGTCGAATGGATTCTTGGCATTGTAAAGCTTGGTAGCTCCAAGGGCTTGGAGAAGGCGA 3069 Query 47976 TCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 48035 || ||| |||||| || ||| ||| | | ||||| || || |||| ||| Sbjct 3070 TCAGCACAGAATTCAATGTATTCGCACATGAGAGATGAGTTCATACCAATGAGTTCTACT 3129 Query 48036 GGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCG-ATGT 48094 || |||| |||| | ||| | | ||| || | ||||||||| | || || ||| Sbjct 3130 GGAAGAGATTCCGAGACAAATTGCTTTTCAATTGCAACAGCATCCCCAATAATTTCATGA 3189 Query 48095 -TAC---CGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAAT 48150 ||| |||| |||| || | | | | |||| | || ||||| | Sbjct 3190 ATACGTTCGTTAGAAAGCTTGTTG-----ATGAGCTTGGAATACATGAGGCAGGCAAAGT 3244 Query 48151 CACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTA 48210 ||||||||||||| ||||| | | ||| | |||||| ||||| | | ||| ||||| | Sbjct 3245 CACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAAAGCTTAAACCAGGCATCA 3304 Query 48211 GTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAA-GATCCAGAAAAGAATATGCCTTCT 48269 |||||||| ||||||||||| || | || ||| ||||| |||||||| || ||||| Sbjct 3305 AACCACGTTTCTTGAGCCAAAAGATCGA-GCAAAATGATCCTGAAAAGAAAATACCTTCA 3363 Query 48270 ACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACCGTT-- 48327 || || ||||| || || | ||| | || || ||| | |||| || Sbjct 3364 ACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATTTTGCCATTGCACCATTTA 3423 Query 48328 -GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 48386 | ||||| | ||| || | ||||||||| || || || ||||| | || | | Sbjct 3424 AGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCAATAGCCCTCAAAACACGA 3483 Query 48387 tttttttCATTGCTATCTTTAACGTAAGTATCTATTA--AAAGACTATACATTTCGGAGT 48444 | |||||| | || || | |||||||| || | || || || || ||| || | Sbjct 3484 TCTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGCAACGAATAAAC--TTCTGAAT 3541 Query 48445 GAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCT 48504 |||||||||| || || || |||||||| ||||||||||| ||||| | | ||||| | Sbjct 3542 GAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGCTTCAGGTACTTGTACTT 3601 Query 48505 CCGTACAAAATCGTTCA--GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 | | |||| |||| |||||||| |||||||| || ||||| || |||||||| Sbjct 3602 CATTGGAAAAA--TTCATGGCCAAATTTTCATTTACAATACCATCCGATGCTGCAAAAAA 3659 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 ||| |||||||| ||||||| || ||| ||| || ||||| |||| || || || Sbjct 3660 TGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAAGTTTTGTCCAATCTTTCAT 3719 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 ||| | | ||||| |||||| || |||||||| || || ||||| |||||||| Sbjct 3720 ATCATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGCTTCAGCTTTCTTATACAT 3779 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 | ||| | ||| ||| ||| || || |||| ||||||| |||||| |||| Sbjct 3780 TTCCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAATCGATTTGGGTTTT 3832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694622491641120