Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq224 401 9e-107 seq2584 298 8e-76 >seq224 Length=84125 Score = 401 bits (444), Expect = 9e-107 Identities = 1206/1838 (66%), Gaps = 43/1838 (2%) Strand=Plus/Minus Query 75406 TGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCT 75465 || |||||| |||||||| || || || || || | |||| |||| |||||||| Sbjct 28859 TGAACGTAGGTAGTACATGCCTGTCTTAAGTCCACGTTTCCAAGCGTAAAAATGCATCGA 28800 Query 75466 TGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGAT 75525 || |||||| ||| |||||||| ||||| | ||||||||| || |||| ||| Sbjct 28799 GGTGAGTTTGCTCACACTTGGATCGGCAATATGGACATTCATCGATTGCGATTGACAGAT 28740 Query 75526 GAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGT 75585 || || || | |||||| || | | || ||| ||||||| || |||||| | || Sbjct 28739 AAATGCACCACGATCAGCAGCAAGATCTAAAATAATCTTTTGCTTAACTTCCCATACTGT 28680 Query 75586 TTTGAAAACTTGTTTGATATCATCTGGAAGATTTG-TA--TTTTGAATGGATCCGCCATC 75642 ||| ||| | ||||||| | ||||| | || || ||||||| || | ||| Sbjct 28679 CTTGTAAATGTCTTTGATACGTTTTGGAATACTTAATACGTTTTGAACACTACCACGATC 28620 Query 75643 AGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAA---CTCT 75699 | || |||| ||| | ||| ||||||| | | | | || || || | Sbjct 28619 ATGTAAAATTTGATTACGTACTTCAGCATTCCAAAGA---CCCAAAGATATAAGTTCTTT 28563 Query 75700 AAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATT 75759 | | || || |||||| |||||| |||| | || | |||| ||| || || Sbjct 28562 CATCAAATATTTGTTGACAATTGTAAATTCACCAGCAAGAACACGACGAGAGTACATGTT 28503 Query 75760 ACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGG 75819 ||| ||||||| | ||||||||||| || | |||||| ||||| ||||| || || Sbjct 28502 GGATGTAAATGGTTCAATTGATTCATTGTTGCCAAGAATTTGTGCAGTAGAAGCTGTTGG 28443 Query 75820 CATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATA 75879 ||| || || | ||| | | ||| | | |||||| | | || | |||| || Sbjct 28442 CATTGGGGCAAGCAAAAGAGAATTGCGAATACCATGCTTGGCCACTTGAGCTTTGAGTGT 28383 Query 75880 TTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTT 75939 ||| |||||||||| || ||| |||| |||| | ||| ||||| | || || || Sbjct 28382 AGCCCAGTCCCAAAGATTTGTTGGAGAAACACCCCACATATCATATTGGAAGATACCTTT 28323 Query 75940 GCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTC---GCA 75996 ||| || || || ||| |||||||| | || | || || | ||| | | Sbjct 28322 GCTTACAGGAGAGCCTGCATACGTTTCGTATGGACCAAATTCTTTGGCAATTTCCATGGA 28263 Query 75997 ACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGAT-CTTGCG 76055 | || | ||| |||| || ||||| || || | |||| || | |||| | Sbjct 28262 TGTTTCCATGGATGCATGGTAA---ATAGTTTCAAAGATTTGAATATTGAGTTTCTTG-G 28207 Query 76056 CTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTC 76115 ||||| | |||||||||||| | |||||||| ||||| || || || ||||| | Sbjct 28206 CTTCAGCAGATTCAAAAGGATAACCCATGAGAATAAAGGCATCAGCAAGCCCTTGAACAC 28147 Query 76116 CAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAAT 76175 ||||||||||||| | ||| | | ||||| || ||||||| ||||||||| || | Sbjct 28146 CAATACCAATAGGACGATGACGCATATTGCTTCGTTTAGCTTCTTCAATAGGGTAGTAGT 28087 Query 76176 TAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGA 76235 | || || || | ||| || | ||| | ||| | ||| | | | | ||| Sbjct 28086 TGATTTCAATCACTTTGTTTAAATTGCGAGTAACAATTTTGGTGATTTTATGCAAATTGG 28027 Query 76236 GAAAATCAAATTTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAA 76295 ||| |||||| ||||| | ||||| | |||||| || ||||| | ||| || | Sbjct 28026 TAAAGTCAAATACACCATCATTGACAAATTTTGAAAGAGCAATCGATGCCAAATTGCACA 27967 Query 76296 CGGCTACCTCAT--TAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTT 76353 | || || |||| | || | | ||||| || | || ||| | ||||| | || Sbjct 27966 CAGCCACTTCATCTTTGCTT--GTATATTCGATAACTTCACAGCACAAGTTACTCGATTT 27909 Query 76354 GATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG---TTACATGAGTCCTTATAAAGAAC 76410 ||||| || | ||||||||||| | |||| || || | || || || | | Sbjct 27908 AATAGTACCTAAGTTTTGTTGGTT---CGATTTGGAATTGCAAGCATCTTTGTACAACAT 27852 Query 76411 AAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCT 76468 | | || || |||||||| || || || |||| ||| | ||| | | | || ||| Sbjct 27851 ATATGGTGTACCAGTTTCGATTTGAGAATCGAGAATGGCAAACCATA--ATTGCTGAGCC 27794 Query 76469 TTTATTATAGATTTGTATCGCTTCTCTCT--TTCATATTGTGTATATAACCGTTCAAATT 76526 || ||| | ||| | | | | || |||| ||| || || || |||||||| Sbjct 27793 TTGATTGTC--TTTCGAGCACGACCTTCAGATTCAAATTTGGTGTACAAAGCTTCAAATT 27736 Query 76527 CATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC--CACTC 76584 | | ||||| ||| | ||| |||| | |||||| || || | || ||| || || Sbjct 27735 CCTTGCCCCAGCAATCTTGCAAGCCAGAAGCTTCATTTGGGCAAA--AAAGACTCCAATC 27678 Query 76585 ACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 ||||| | | | || || |||||||| | |||||| ||||| | ||| ||| ||||| Sbjct 27677 ACCATTTGCTTCGACACGCTTCATAAACAAATCAGGGATCCACAAGGCATAAAAGAGATC 27618 Query 76645 TCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATC 76704 || | | || |||||| || ||| || || ||||| | ||||| | |||||| Sbjct 27617 ACGAGCACGGTGTAGTTCATTGCCATGATTTTTCTTGAGATCCAAAAACTCAAAAATATC 27558 Query 76705 AGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATC 76764 || |||||||||||| ||||| || || | |||| || ||| ||| || || || Sbjct 27557 AGCATGCCATGGTTCAAGATACATGGCAAACGAACCCTTACGCTTACCACCACCTTGGTC 27498 Query 76765 TATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACC 76824 | ||| | || || | ||| | |||| | ||| ||||| || ||||| |||| || Sbjct 27497 AACATAGCGAGCGGTATCATTGAATACTCGAAGCATGGGAATGATACCGTTCGATGAGCC 27438 Query 76825 ATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCC 76884 ||| || ||| ||||||||| || |||||||| ||| | ||| || || Sbjct 27437 ATTGGTACCACGAATATAACTATTTGTTGAGCGAATATTGTGGATATTCACGCCGATACC 27378 Query 76885 TCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACT 76944 || ||| ||| || || |||||| ||||||| || ||||| || || || || Sbjct 27377 ACCAGCCCATTTGGAAATACAAGCACATTGTTTCAAAGTATCATAAATACCTTCAATCGA 27318 Query 76945 ATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATT 77004 ||| ||| ||||| | |||||| || |||| ||| || | ||| || ||||| Sbjct 27317 ATCGTCCTTCATGGCCAAAAGAAAGCAAGACGACAATTGTGGACGTGGAGTACCAGCATT 27258 Query 77005 AAACAATGTAGGAGATGCATGAGTGAACCATTTTTCA-GAAAGTAGATTGTATGTTTCAA 77063 || | ||||| | ||||| ||||| | ||| | | ||| | || || || | Sbjct 27257 GAAAAGAGTAGGTGTAGCATGGGTGAAGAACATTTGACTCATGTA-TTCATAAGTGTCCA 27199 Query 77064 TAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAG 77123 | || | | ||||| || |||||| || ||||| |||||||| | ||| ||||||| Sbjct 27198 AAGCTCCAGCAATATCTTCTTTATGAATACCAACAGCAACACGCATGATCATGTGCTGAG 27139 Query 77124 GTCGTTCTACAGTCTTAT-TATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAA 77182 ||||||| ||| ||| | ||||| || | ||| || ||||||||||||||||| Sbjct 27138 GTCGTTC-ACAAACTTTTCCATTTACTTGAAGCAAATAGCTCTTTTCCAAAGTTTTAAAT 27080 Query 77183 CCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| || | ||| ||| || | || ||||||| Sbjct 27079 CCAAAGTAATCATATTCAAAATCACGATCAGAAATAAT 27042 >seq2584 Length=5567 Score = 298 bits (330), Expect = 8e-76 Identities = 620/904 (69%), Gaps = 43/904 (5%) Strand=Plus/Plus Query 46344 GTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCAT 46403 ||||||||| ||||| || |||||||| || || || |||| | ||||| | ||||| Sbjct 2949 GTATTCACCGACACGCTTTTCGAAAAAGTTGGTCTTTCCTTGAAGAGATATCATGTCCAT 3008 Query 46404 AAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCT 46463 | || || ||||| | |||| |||| || || ||| | || | || | Sbjct 3009 CCAGTCGAATGGATTCTTGGCATTGTAAAGCTTGGTAGCTCCAAGGGCTTGGAGAAGGCG 3068 Query 46464 ATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAA---TTCATTCCTATGAGTTT 46520 ||| ||| |||||| || || || || ||| | | ||||| || ||||||| Sbjct 3069 ATCAGCACAGAATTCAATGTA--TTCGCA-CATGAGAGATGAGTTCATACCAATGAGTTC 3125 Query 46521 GACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCG--ATATTATC 46578 || || |||| |||| | ||| | | |||||| | ||||||||| ||| | || Sbjct 3126 TACTGGAAGAGATTCCGAGACAAATTGCTTTTCAATTGCAACAGCATCCCCAATAATTTC 3185 Query 46579 GATGT-TACTGTTTCCTCA-----CTTGGTGGATG--CATCAAATGTTTAAACATTAAAC 46630 ||| ||| ||| | | |||| || ||| | | ||| |||| | | Sbjct 3186 -ATGAATACG--TTCGTTAGAAAGCTTGTTG-ATGAGCTTGGAAT------ACATGAGGC 3235 Query 46631 ATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCC 46690 | ||||| ||||||||||| || ||||| | | ||| | |||||| ||||| | | | Sbjct 3236 AGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAAAGCTTAAAC 3295 Query 46691 CAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAA-GATCCAGAAAAGAAT 46749 ||||||| | ||||| || ||||||||||| || | || ||| ||||| |||||||| Sbjct 3296 CAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCGA-GCAAAATGATCCTGAAAAGAAA 3354 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG--AA 46807 || ||||| ||||| || || || |||| | ||| | || ||| ||| || | Sbjct 3355 ATACCTTCAACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCA--ATTTTGCCAT 3412 Query 46808 TCCACCTTT---GAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCAT 46864 | |||| || ||||||| | ||| || | ||||||||| || || || ||||| Sbjct 3413 TGCACCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCAATAGCCC 3472 Query 46865 TAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA--AAAGACTATA 46922 | || | | | |||||| || | || || | ||| ||||| || | || || || | Sbjct 3473 TCAAAACACGATCTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGCAACGAATAAA 3532 Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 46982 | |||||||||||| ||||| ||||| || |||||||| ||||||||||| ||||||| Sbjct 3533 C--TTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGCTTCAGG 3590 Query 46983 AATCTGTACCTCTGTACAAAATCGTTCA--GACAAATTCTCATTCACTATTCCATCACTA 47040 | ||||| || | |||| |||| | |||||| ||||| || || ||||| Sbjct 3591 TACTTGTACTTCATTGGAAAAA--TTCATGGCCAAATTTTCATTTACAATACCATCCGAT 3648 Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTC 47100 || |||||||||||||||||||| ||||||| || ||||| | || ||||| || Sbjct 3649 GCTGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAAGTTTTGTC 3708 Query 47101 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCT 47160 || || || ||||| | | ||||| |||||| || ||||| || || || ||| Sbjct 3709 CAATCTTTCATATCATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGCTTCAGCT 3768 Query 47161 TTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGA 47220 || |||||||| | ||| | ||| | ||| || ||||||| ||||||| |||||| Sbjct 3769 TTCTTATACATTTCCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAATCGATTTGGG 3828 Query 47221 TTTT 47224 |||| Sbjct 3829 TTTT 3832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712886874010560