Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5008 122 2e-22 seq2092 104 5e-17 seq419 102 2e-16 seq580 95.1 3e-14 seq2232 91.5 3e-13 >seq5008 Length=14815 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||||||| ||||||||||||||||||||| ||||| | |||||| Sbjct 6433 AGGACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTCAAAGTACGTCCATCT 6374 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || ||||| | | || || || | | || |||||||| ||| Sbjct 6373 TCAAGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 6314 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||||| |||||| | || | || ||| || || || | || || || Sbjct 6313 TGAATCTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAACGTGATGGTC 6254 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | ||||| ||||||| |||||| Sbjct 6253 TTGCCTGTCAATGTCTTGACGAAGATCTGCAT 6222 >seq2092 Length=13256 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || | ||| || || |||||||||||||||||| ||||| | |||||| Sbjct 11906 AGGACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAATCGCTCAAAGTGCGACCATCT 11847 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| | | || || || | | || |||||||| ||| Sbjct 11846 TCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 11787 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||||||||| |||||| | || | || ||| || || || | || || || Sbjct 11786 TGAATTTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAATGTGATGGTC 11727 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| | ||||| ||||||| |||||| Sbjct 11726 TTACCCGTCAAGGTCTTTACGAAGATCTGCAT 11695 >seq419 Length=23932 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT-CTCCCATC 151951 ||||| | |||||||| || || |||||||||||||| || |||| | | | ||||| Sbjct 23725 AGGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCA-CTAAGGGTGCGGCCATC 23667 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||| || || || || || | || || || | | || |||||||| || Sbjct 23666 TTCAAGTTGTTTACCAGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTC 23607 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||| ||||| ||||| | || | | || || || || || |||||||| || Sbjct 23606 TTGAATCTTTTGCTTGACGTTGTCAATGGAATCCGATGGTTCGACATCGAGAGTAATGGT 23547 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| | ||||||||||||| ||||| Sbjct 23546 CTTACCCGTCAATGTCTTCACGAAGATTTGCAT 23514 Score = 100 bits (110), Expect = 7e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| | ||||| || |||||||||||||| ||| |||||| | |||||||| Sbjct 23495 GACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTTAAAGTACGGCCATCTTC 23436 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||| || || || | || || || | | || |||||||| ||||| Sbjct 23435 GAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTG 23376 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || |||||||| ||| | || | | ||| ||| || || ||||| || || || || Sbjct 23375 GATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACGTCAAGTGTGATCGTCTT 23316 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | ||||| || || | ||||| Sbjct 23315 ACCGGTCAACGTCTTTACAAAAATTTGCAT 23286 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 151914 TCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAG 151973 || |||||||||||||| ||| | ||| | |||||||| || || ||||| ||| Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 151974 ATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTC 152033 || || | || || || | | || |||||||| ||||| || ||||| |||||| | Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 23813 Query 152034 TCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACG 152093 || | || ||| || || || || ||||| ||||| ||||| | ||||| || Sbjct 23812 TCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGACA 23753 Query 152094 AAGACCTGCAT 152104 |||| ||||| Sbjct 23752 AAGATTTGCAT 23742 >seq580 Length=37562 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||| || || || ||||| ||||||||||| | ||| | |||||| Sbjct 8282 AGGACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTGAGAGTGCGGCCATCT 8341 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || | | |||||||| | | ||| |||||||| ||| Sbjct 8342 TCGAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCT 8401 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || |||||||| || | || | ||| ||| || || || | ||||| || Sbjct 8402 TGGATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACATCCAATGTAATTGTC 8461 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | ||||| ||||| | ||||| Sbjct 8462 TTGCCGGTCAACGTCTTTACGAAAATTTGCAT 8493 >seq2232 Length=15861 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || | ||| || || ||||| |||||||||||| ||||| | |||||| Sbjct 607 AGGACCAAGTGCAAAGTCGATTCCTTTTGAATGTTGTAATCGCTCAAAGTACGACCATCT 548 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| | | || || || | | || |||||||| || Sbjct 547 TCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCC 488 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||||| ||||| | || | ||| ||| |||||| || | || || || Sbjct 487 TGGATCTTTTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCTACATCCAACGTGATGGTC 428 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || | ||||| ||||| | |||||| || Sbjct 427 TTGCCAGTCAATGTCTTGACGAAAATCTGCATATT 393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153741960506443