Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq5008 116 3e-21 seq419 116 3e-21 seq580 113 4e-20 >seq5008 Length=14815 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || || ||||| || ||||| ||||| ||||| || |||| ||||| Sbjct 6222 ATGCAGATCTTCGTCAAGACATTGACAGGCAAGACCATCACGTTGGATGTCGAACCTTCG 6281 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||||| ||| | || || ||||| ||| ||||| |||||| |||| |||||| Sbjct 6282 GATTCGATTGATAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 6341 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | || | ||| ||||||||| | |||||| ||| || |||||| || Sbjct 6342 CAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGACGTACTTTGAGCGATTACAAC 6401 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || |||||||||||||| || ||||| || | ||||| || ||||| Sbjct 6402 ATCCAAAAAGAATCTACTCTTCATTTGGTCCTTCGTCTTCGTGGTGG 6448 >seq419 Length=23932 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| || ||||||||||| || || || || | || ||||| Sbjct 23286 ATGCAAATTTTTGTAAAGACGTTGACCGGTAAGACGATCACACTTGACGTCGAACCTTCG 23345 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || ||| | || |||||||| || ||||| |||||| |||| |||||| Sbjct 23346 GACTCCATTGATAATGTTAAACAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAA 23405 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | || |||| ||| || |||||| | |||||| ||| | ||| || || Sbjct 23406 CAACGCCTCATTTTTGCCGGTAAACAACTCGAAGATGGCCGTACTTTAAGCGACTACAAC 23465 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||||||| | ||||| || |||||||| || ||||| Sbjct 23466 ATCCAAAAGGAATCTACATTGCATTTGGTCTTGCGTCTTCGTGGTGG 23512 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| |||||||| || ||||| || |||||||||||| | || ||||| Sbjct 23742 ATGCAAATCTTTGTCAAGACATTGACGGGTAAAACCATTACCCTCGATGTCGAACCTTCG 23801 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 |||||| ||| | | || || ||||| || ||||| |||||| |||| |||||| Sbjct 23802 GATTCTATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCACCTGATCAA 23861 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT 111255 ||| | || || | ||| ||||| ||| | |||||| Sbjct 23862 CAACGTCTCATCTTTGCCGGCAAGCAACTCGAAGAT 23897 >seq580 Length=37562 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| ||||| || ||||| || || || ||||| | || |||||| Sbjct 8265 ATGCAAATTTTCGTCAAGACATTGACTGGAAAGACTATTACACTTGACGTGGAACCTTCA 8206 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || ||| | || |||||||| ||| |||||||||||| | || |||||| Sbjct 8205 GACTCAATTGATAATGTGAAACAAAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 8146 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | |||| ||| ||||||||| | |||||| | || | || || || Sbjct 8145 CAACGTTTAATTTTTGCTGGCAAACAACTCGAAGATGGTCGTTCTCTCAGTGACTACAAC 8086 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || |||||||| |||||| |||| |||||| | || ||||| Sbjct 8085 ATTCAGAAGGAATCTACTCTACATCTAGTCTTGCGTTTACGTGGTGG 8039 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||||||||| ||||| || |||||||||||| |||| ||||| | Sbjct 8037 ATGCAAATCTTTGTCAAAACTTTGACGGGAAAAACCATTACCTTGGATGTTGAACCATCC 7978 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || ||| | || || ||||| || ||||| |||||| | || |||||| Sbjct 7977 GACTCGATTGATAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCGGATCAA 7918 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTATA 111277 ||| | | |||| || || |||||| | ||||| || | | || | || || | Sbjct 7917 CAACGTTTGATTTTCGCTGGTAAACAACTTGAAGACGGTCGTACATTAAG--TGACTACA 7860 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 | || ||||| |||||||| || || || || |||||||| || || |||| Sbjct 7859 ACATTCAAAAGGAATCTACTCTCCACTTGGTATTGCGTCTTCGTGGAGGCA 7809 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || || |||||||||||||| || ||||| |||| ||||| Sbjct 8493 ATGCAAATTTTCGTAAAGACGTTGACCGGCAAGACAATTACATTGGATGTCGAACCTTCG 8434 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || ||| | ||||||||||| || || || |||||| | || || || Sbjct 8433 GACTCGATTGATAACGTAAAACAAAAGATCCAAGATAAGGAAGGCATCCCACCAGACCAG 8374 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | |||| ||| ||||||||| | |||||| ||| | ||||| || Sbjct 8373 CAACGATTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACTCTCAGTGATTACAAC 8314 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||| ||||| ||||| || | ||| |||| ||||| Sbjct 8313 ATTCAAAAGGAATCCACACTTCATTTGGTCCTACGTTTGCGTGGTGG 8267 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| |||||||| || | ||||| || || ||||| |||| |||||| Sbjct 8721 ATGCAAATCTTTGTCAAGACACTCACCGGAAAGACAATTACGTTGGACGTGGAACCTTCG 8662 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || ||| | || || ||||||||| ||||| ||||| |||| |||||| Sbjct 8661 GACTCGATTGATAACGTCAAGCAAAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 8602 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | || | ||| |||||||||||||||||| ||| | || || ||| Sbjct 8601 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGACGTACTCTTAGTGACTACAAT 8542 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||| || | || || ||||||||| | || || || Sbjct 8541 ATCCAAAAGGAATCGACCTTGCACTTGGTGTTGCGTTTACGAGGCGG 8495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421783783985608