Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2092 187 5e-42 seq419 185 2e-41 seq580 181 2e-40 seq5008 178 3e-39 seq2232 168 1e-36 seq2102 125 1e-23 seq2143 84.2 5e-11 >seq2092 Length=13256 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| |||||||| |||| || || || ||| |||||||||||||| || Sbjct 11922 ACCACCACGAAGGCGAAGGACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAATCGCT 11863 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| ||||| || ||||| || ||||||||||||||||||||||| || || Sbjct 11862 CAAAGTGCGACCATCTTCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGG 11803 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||||||||| || ||| || || |||| || | ||||||| |||||| Sbjct 11802 AATGCCTTCCTTGTCTTGAATTTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGAC 11743 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct 11742 ATCCAATGTGATGGTCTTACCCGTCAAGGTCTTTACGAAGATCTGCAT 11695 >seq419 Length=23932 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||| ||||| |||| || | || ||| |||||||||||||||||| | Sbjct 23740 CCACCACGCAAACGAAGGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCACTA 23681 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || |||||||| || ||||| || | |||||||| || ||| Sbjct 23680 AGGGTGCGGCCATCTTCAAGTTGTTTACCAGCAAAAATGAGGCGTTGTTGATCTGGAGGA 23621 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| |||||| || ||| | || || | ||||| | |||||| Sbjct 23620 ATGCCTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGAATCCGATGGTTCGACA 23561 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| || |||||||||||||| ||||| ||||| || ||||| Sbjct 23560 TCGAGAGTAATGGTCTTACCCGTCAATGTCTTCACGAAGATTTGCAT 23514 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| ||| || || ||| ||||||||||||||||| Sbjct 23513 ACCACCACGAAGACGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCT 23454 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || |||||||| || |||||||| |||||||| || | |||||||| || || Sbjct 23453 TAAAGTACGGCCATCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGG 23394 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||||||||||||| ||| || |||| || | |||||||| |||||| Sbjct 23393 AATGCCTTCCTTGTCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGAC 23334 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || |||||||||||||| ||||| ||||| || || || ||||| Sbjct 23333 GTCAAGTGTGATCGTCTTACCGGTCAACGTCTTTACAAAAATTTGCAT 23286 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||| || || |||| ||| || || ||| |||||||| |||||||| Sbjct 23284 CCACCACGCAAACGGAGGACCAAATGCAATGTAGATTCCTTTTGGATATTGTAGTCGCTC 23225 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || || || || || ||||| || |||||||| | ||||||||| || ||| Sbjct 23224 AAAGTTCGTCCGTCTTCGAGCTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGA 23165 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| ||||| |||||| ||| ||| | ||||| | |||||| | |||||| Sbjct 23164 ATGCCTTCCTTATCTTGAATCTTTTGTTTCACGTTGTCGATGGAGTCCGATGGTTCGACG 23105 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || |||||||||||||| |||||||||||||| || || ||||| Sbjct 23104 TCAAGTGTGATCGTCTTACCGGTCAAAGTCTTAACAAAGATTTGCAT 23058 Score = 168 bits (186), Expect = 1e-36 Identities = 152/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||||||||||||||| || ||||||||||| || ||||| || ||||||||| Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||||||||| ||| ||||| || |||||||||||||||||| || || | Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 23813 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || |||| ||||||| |||||| ||||| || || || ||||||||||| ||||| || Sbjct 23812 TCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGACA 23753 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 23752 AAGATTTGCAT 23742 >seq580 Length=37562 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||| || || |||| ||| | ||| ||| ||||| |||||||| ||| Sbjct 8266 ACCACCACGCAAACGTAGGACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACT 8325 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||||||||| || |||||||| || ||||| ||||| ||||| ||||| || Sbjct 8326 GAGAGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGG 8385 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| |||||||||||| ||||||| |||| || | |||||||| |||||| Sbjct 8386 GATGCCTTCCTTATCTTGGATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGAC 8445 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || ||||| || ||||| ||||| ||||| || ||||| Sbjct 8446 ATCCAATGTAATTGTCTTGCCGGTCAACGTCTTTACGAAAATTTGCAT 8493 Score = 143 bits (158), Expect = 6e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| |||||||| ||||||||| ||| || || ||||| || | |||||| || ||||| Sbjct 8530 TTCCTTTTGGATATTGTAGTCACTAAGAGTACGTCCATCTTCCAATTGTTTGCCAGCAAA 8589 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||||||||||||||| || |||||||| ||||||||||| || ||| || ||| | Sbjct 8590 GATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTTTGCTTGACGTT 8649 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||| || | |||||||| ||| || || | || || ||||| || || | ||||| || Sbjct 8650 ATCAATCGAGTCCGAAGGTTCCACGTCCAACGTAATTGTCTTTCCGGTGAGTGTCTTGAC 8709 Query 283088 GAATATCTGCAT 283099 || || ||||| Sbjct 8710 AAAGATTTGCAT 8721 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| | || | || ||||||| || ||| || || |||||||||||| Sbjct 8038 ACCACCACGTAAACGCAAGACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACT 8097 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || | || ||||| || |||||||| || ||||| || ||||||||||| || || Sbjct 8098 GAGAGAACGACCATCTTCGAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGG 8157 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || || |||||||| |||||| ||| || |||| || | ||| |||| ||| || Sbjct 8158 GATGCCTTCTTTGTCTTGAATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCCAC 8217 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || ||||| ||||| ||||| || ||||| Sbjct 8218 GTCAAGTGTAATAGTCTTTCCAGTCAATGTCTTGACGAAAATTTGCAT 8265 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || | ||||| || | || ||| ||||| |||||||||||| Sbjct 7811 CCTCCACGAAGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCACTT 7870 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || || || || |||||||| || || || |||||||||||||| || || Sbjct 7871 AATGTACGACCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGAGGG 7930 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||||||||||||| || || |||| || | ||| || | ||| || Sbjct 7931 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTCAACA 7990 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || || || ||||||||||| || || || || ||||| Sbjct 7991 TCCAAGGTAATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 >seq5008 Length=14815 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| ||| | || |||||||||||||||||| || Sbjct 6449 ACCACCACGAAGACGAAGGACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCT 6390 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || |||||||| || |||||||||||||||||||| || || Sbjct 6389 CAAAGTACGTCCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGG 6330 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||||||||| |||||| || || |||| || | ||||||| |||||| Sbjct 6329 AATGCCTTCCTTGTCTTGAATCTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGAC 6270 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 6269 ATCCAACGTGATGGTCTTGCCTGTCAATGTCTTGACGAAGATCTGCAT 6222 >seq2232 Length=15861 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| || || || ||| ||||| |||||||| || Sbjct 623 ACCACCACGAAGACGAAGGACCAAGTGCAAAGTCGATTCCTTTTGAATGTTGTAATCGCT 564 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || ||||| || ||||||||||||||||||||||| || || Sbjct 563 CAAAGTACGACCATCTTCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGG 504 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||| ||||||||| || ||| | || || | |||||||| || || Sbjct 503 AATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCTAC 444 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | ||||| ||||| || ||||| ||||| ||||| |||||||| || Sbjct 443 ATCCAACGTGATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCATATT 393 >seq2102 Length=15428 Score = 125 bits (138), Expect = 1e-23 Identities = 179/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 316950 GAAGTCAACGATAGACGTGTTAGATTCGGATCCGTCGAGGTCATGCTCAACATATGCAGT 317009 ||||||||||| ||| | || ||| | | ||||| || ||||| || |||| Sbjct 11656 GAAGTCAACGACAGAGAGATCAGCTTCTTCGGCTTGGAGGTTGTGTTCAACGTACACAGT 11715 Query 317010 TTTCAGAATATCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAG 317069 || || |||||| | ||||| ||||| | || || || |||| || | ||| || Sbjct 11716 CTTAAGTTCATCCTTGGAAGGGAATCCTTCAAGTTGGCCATTGGCAATGGCACGCATGAG 11775 Query 317070 TGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATT 317129 || || || ||| ||| || || ||||||||||| || |||| |||||||| || || Sbjct 11776 GGTGGATTTACCACAACCGTTTGGACCGCAAAGACCGTAGCGATGACCCTTCTTGAGGTT 11835 Query 317130 AAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACA 317189 | |||| ||||| || | |||| ||||||| || || || ||||| |||||||| || Sbjct 11836 CATGCGGGCATTGTTGAGCAAAATCATACCACCGTAAGCGAGGGAGAATTCACAATCGCA 11895 Query 317190 CAGGTCCTCGCC 317201 ||||| || || Sbjct 11896 AAGGTCATCACC 11907 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 316160 ATTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAA 316219 |||| || |||||||| || |||||||||| ||||| ||||||| | || || | Sbjct 10872 ATTCCTTATCTTCACCAGATTGGAAACGCCATTGAATGTATTGATTGGCAGAGATATCCA 10931 Query 316220 GATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGAT 316279 || | || |||||||||||||| || || || || || |||| ||||||| || | Sbjct 10932 AGTGTTGTTCAATGTGGTGGAAAGCATGTTGAGCGACATAGGCAAAACGCATAGCAGGGT 10991 Query 316280 GCTTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTAC 316339 ||||||| || |||| | ||||| || | | ||| || | || ||||| | ||| Sbjct 10992 GCTTCCACACAGTACCTTCAGTAGGCTCGGTTTCCCCAGTCAACATCTTAATCATGGTAG 11051 Query 316340 TTTTTCCCGCGCCGTTTTCACCCACGACA 316368 ||| || || |||||| ||| | |||| Sbjct 11052 ATTTACCAGCACCGTTTGGACCGATGACA 11080 >seq2143 Length=34373 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 8949 TCTACCAGGGCGGATCAACGCAGGGTCAAGATTTTCAGGGTGGTTGCTCGTCATTATAAG 9008 || |||||| || ||||| || || ||||| ||||||||||||||| | ||||| || | Sbjct 26836 TCGACCAGGTCGAATCAAAGCTGGATCAAGTTTTTCAGGGTGGTTGGTGGTCATAATTAC 26777 Query 9009 AATCCTCCCGGGACATTCGAGAACTCCATCTAATATATTAAGAAGG 9054 ||| | || || || || | ||| ||||| || | |||||||||| Sbjct 26776 AATACGTCCAGGGCAATCAACAACACCATCCAAAACATTAAGAAGG 26731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046667677291782