Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2584 315 7e-81 >seq2584 Length=5567 Score = 315 bits (348), Expect = 7e-81 Identities = 608/883 (69%), Gaps = 18/883 (2%) Strand=Plus/Plus Query 23224 TATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTCCATA 23283 ||||| || ||||| |||||||||| || ||||| || | | ||||| | ||||| Sbjct 2950 TATTCACCGACACGCTTTTCGAAAAAGTTGGTCTTTCCTTGAAGAGATATCATGTCCATC 3009 Query 23284 AAATCAAATGGATTAGAAGTATTATATACAGCTT--TACATGATAATTCCTTTAAAAGCC 23341 | || |||||||| | ||| || | |||| || | | | | | ||| | Sbjct 3010 CAGTCGAATGGATTCTTGGCATTGTAAA--GCTTGGTAGCTCCAAGGGCTTGGAGAAGGC 3067 Query 23342 TATCTGCTACA-AATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTT 23400 ||| || ||| |||||||| |||| ||||| | | |||| ||||| || |||| | Sbjct 3068 GATCAGC-ACAGAATTCAATGTATTCGCACATGAGAGATGAGTTCATACCAATGAGTTCT 3126 Query 23401 ACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGA 23460 ||||||| | || | | ||| | |||||||| | ||||||||| ||| |||| | Sbjct 3127 ACTGGAAGAGATTCCGAGACAAATTGCTTTTCAATTGCAACAGCATCCCCAATAATTTCA 3186 Query 23461 ACAATAACTTCTTCACTAGGTGGATATTTTAAATACTT---AAACAATAAACATGCAAAA 23517 |||| ||| | ||| | | || | ||| | ||| | || ||||| Sbjct 3187 TGAATACGTTCGT---TAGAAAGCTTGTTGATGAGCTTGGAATACATGAGGCAGGCAAAG 3243 Query 23518 TCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATT 23577 |||||||| || || ||||| | | ||| | ||| || ||||| |||| || ||||| Sbjct 3244 TCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAAAGCTTAAACCAGGCATC 3303 Query 23578 AATCCTCGTTTTTTAATCCAAAATATTGCAGCAAA-TGATCCGGAAAAGAAAATACCCTC 23636 || || ||||| || | |||||| || | |||||| |||||| |||||||||||||| || Sbjct 3304 AAACCACGTTTCTTGAGCCAAAAGATCG-AGCAAAATGATCCTGAAAAGAAAATACCTTC 3362 Query 23637 AACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAttt 23696 |||||| |||||||| |||| |||| || | | ||| | | || |||||| Sbjct 3363 AACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATTTTGCCATTGCACCATTT 3422 Query 23697 ttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAA 23756 | ||| ||||| || || |||||| ||| || ||||| || | || | | Sbjct 3423 AAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCAATAGCCCTCAAAACACG 3482 Query 23757 AGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATG 23816 | |||||| || | || | ||||| |||||||| || || ||| | ||| ||||| Sbjct 3483 ATCTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGCAACGAATAAACTTCTGAATG 3542 Query 23817 AATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATC 23876 ||||||||| |||||||| ||||| |||||||||||||||||||||| | ||| || || Sbjct 3543 AATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGCTTCAGGTACTTGTACTTC 3602 Query 23877 ATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGC 23936 ||| |||| | | || |||||||| || ||||||||||| || ||||| || || Sbjct 3603 ATTGGAAAAATTCATGGCCAAATTTTCATTTACAATACCATCCGATGCTGCAAAAAATGC 3662 Query 23937 AAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAA-TTTTTTCCAATCATTAATAT 23995 | |||| | ||||| || ||||| || ||| |||| ||||||| || |||| Sbjct 3663 CAATACATGGGTAATAAAGAATCGTTCAT-TGTCCGTAAGTTTTGTCCAATCTTTCATAT 3721 Query 23996 CTTTTGATAA-ATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATT 24054 | | || || ||| | ||| || | ||||||||||| || || |||||||||| Sbjct 3722 C-ATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGCTTCAGCTTTCTTATACATT 3780 Query 24055 AGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTAT 24097 ||| | ||| | ||||| || ||||| | || |||| || Sbjct 3781 TCCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAATCGAT 3823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521453236306200