Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq580 123 2e-23 seq2092 111 1e-19 seq419 107 1e-18 seq2232 105 5e-18 seq5008 93.3 3e-14 >seq580 Length=37562 Score = 123 bits (136), Expect = 2e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| | | |||||||| ||| | || ||||||||||| ||||| Sbjct 8488 TTGCATCCCGCCTCGTAAACGCAACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTA 8547 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || || | || |||| || || || |||||||||||||| || ||||| Sbjct 8548 GTCACTAAGAGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATC 8607 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || ||| | ||||||||| || || || ||||| | | | || | ||| | | Sbjct 8608 TGGAGGAATACCTTCCTTGTCTTGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGG 8667 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 |||||| |||| |||||| |||||||| ||||| ||||| || ||||||||||||| Sbjct 8668 TTCCACGTCCAACGTAATTGTCTTTCCGGTGAGTGTCTTGACAAAGATTTGCATGA 8723 Score = 96.9 bits (106), Expect = 2e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 44100 TTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGT 44159 || ||| ||| || || | || | ||| |||| ||| || || |||||||| |||| Sbjct 7800 TTAATTACATGCCTCCACGAAGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGT 7859 Query 44160 TGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCT 44219 |||| || | | || |||| || || || || || || || |||||||| || | Sbjct 7860 TGTAGTCACTTAATGTACGACCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTT 7919 Query 44220 GATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGG 44279 |||| | ||| | |||||||| || ||||| ||||| | | | || | ||||| Sbjct 7920 GATCCGGAGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGG 7979 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || |||| ||||| || |||||||| | || || || ||||||||||| Sbjct 7980 ATGGTTCAACATCCAAGGTAATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||||| ||| |||||||| ||||||||||| ||| ||| | || || Sbjct 8285 ACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTGAGAGTGCGGCCATCTTCG 8344 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || || ||||| ||||| || ||||| |||| || | |||||||| || Sbjct 8345 AGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGG 8404 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| || || | | | || | ||| | | ||| || |||| ||||| ||||| Sbjct 8405 ATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACATCCAATGTAATTGTCTTG 8464 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| ||||| |||||||| Sbjct 8465 CCGGTCAACGTCTTTACGAAAATTTGCAT 8493 >seq2092 Length=13256 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||||||||||||||||||| | ||| | || || || ||||| ||||||||| Sbjct 11885 TCCTTTTGGATGTTGTAATCGCTCAAAGTGCGACCATCTTCGAGTTGCTTGCCGGCAAAG 11826 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| || ||||||| ||| | |||||||| || || || ||||| | | Sbjct 11825 ATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTTGCTTGACATTA 11766 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || | || | | ||| || |||| || || ||||| ||||| | |||||| ||| Sbjct 11765 TCAATCGAATCCGAAGGTTCGACATCCAATGTGATGGTCTTACCCGTCAAGGTCTTTACG 11706 Query 44327 AAGATTTGCAT 44337 ||||| ||||| Sbjct 11705 AAGATCTGCAT 11695 >seq419 Length=23932 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||||||||| ||||||||| || || | || || || ||||| || |||||| Sbjct 23020 TCCTTTTGGATATTGTAATCGCTCAGGGTACGACCATCTTCGAGTTGCTTGCCAGCAAAG 22961 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | ||| || ||||||| ||| | |||||||| || ||||| ||||| | | Sbjct 22960 ATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTTTGCTTGACGTTG 22901 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||| ||| | | || || || | ||| || ||||| |||||||| ||||| || Sbjct 22900 TCAATGGAGTCCGATGGCTCAACATCGAGCGTGATTGTCTTCCCCGTGAGTGTCTTGACA 22841 Query 44327 AAGATTTGCATG 44338 |||||||||||| Sbjct 22840 AAGATTTGCATG 22829 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || ||||||||||||||||| || || ||| | || || Sbjct 23722 ACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCACTAAGGGTGCGGCCATCTTCA 23663 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || || ||||| || | || || ||||||| ||| | |||||||| || Sbjct 23662 AGTTGTTTACCAGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGA 23603 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | | |||| || | | ||| || || | ||||| ||||| Sbjct 23602 ATCTTTTGCTTGACGTTGTCAATGGAATCCGATGGTTCGACATCGAGAGTAATGGTCTTA 23543 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | |||||||||||||||||||| Sbjct 23542 CCCGTCAATGTCTTCACGAAGATTTGCAT 23514 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 ||||||||||| ||||| ||| | ||| || |||| || ||||| || || |||| Sbjct 23248 TCCTTTTGGATATTGTAGTCGCTCAAAGTT--CGTCCGTCTTCGAGCTGTTTACCAGCAA 23191 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 |||| | ||| || ||||||| ||| | |||||||| || ||||| || |||| Sbjct 23190 AGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTTTGTTTCACGT 23131 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | |||| ||| | | ||| || || | || |||||||| || || | ||||| | Sbjct 23130 TGTCGATGGAGTCCGATGGTTCGACGTCAAGTGTGATCGTCTTACCGGTCAAAGTCTTAA 23071 Query 44325 CGAAGATTTGCATG 44338 | |||||||||||| Sbjct 23070 CAAAGATTTGCATG 23057 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||||||||||||||| ||| ||| ||| | || || || ||||| ||||||||| Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATG 44264 || | ||| || ||||| | || | |||||||| || ||||| ||||| || || Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 23813 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | || | || | | ||| || || | ||||| || || ||||| | ||||| | Sbjct 23812 T--CAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGA 23755 Query 44325 CGAAGATTTGCATG 44338 | |||||||||||| Sbjct 23754 CAAAGATTTGCATG 23741 >seq2232 Length=15861 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||| |||||||||||| | || | || || || ||||| ||||||||| Sbjct 586 TCCTTTTGAATGTTGTAATCGCTCAAAGTACGACCATCTTCGAGTTGCTTGCCGGCAAAG 527 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| || ||||||| ||| | ||||||||| ||| ||||| ||||| | | Sbjct 526 ATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTG 467 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || | ||| | | || || |||| ||| || ||||| || || | ||||| ||| Sbjct 466 TCAATCGAGTCCGAAGGCTCTACATCCAACGTGATGGTCTTGCCAGTCAATGTCTTGACG 407 Query 44327 AAGATTTGCAT 44337 || || ||||| Sbjct 406 AAAATCTGCAT 396 >seq5008 Length=14815 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||||| || || |||||||||||||||||| | || | || || Sbjct 6430 ACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTCAAAGTACGTCCATCTTCA 6371 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || || |||||||||||||| || ||||||| ||| | |||||||| || Sbjct 6370 AGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGA 6311 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | | || | || | | ||| || |||| ||| || ||||| Sbjct 6310 ATCTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAACGTGATGGTCTTG 6251 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| |||||||| ||||| Sbjct 6250 CCTGTCAATGTCTTGACGAAGATCTGCAT 6222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359967002086461