Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq365 140 3e-28 SEQ16359 138 1e-27 seq1673 131 2e-25 seq277 120 3e-22 >seq365 Length=500478 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || |||||||||||| | || || || ||| Sbjct 9158 ATGCAGATCTTCGTCAAGACACTCACTGGTAAAACCATCACCCTGGAGGTTGAGCCCAGT 9099 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || | || || | |||||||| ||||| ||| | || || Sbjct 9098 GACACCATCGAGAACG-TGAAAGCTAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCA 9040 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| ||| ||||| |||||||| |||| ||||||||| |||||||| Sbjct 9039 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCTGACTACAA 8980 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || || || |||| ||||||| ||| Sbjct 8979 CATCCAGAAGGAATCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGGC 8931 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || ||||||||| | || || || ||| Sbjct 4033 ATGCAGATCTTTGTCAAGACACTCACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 3974 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||| ||| | |||||| Sbjct 3973 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 3914 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 3913 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 3854 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| || || || ||| |||| ||||||| || Sbjct 3853 ATCCAGAAGGAATCCACCCTCCACCTTGTGCTGCGTCTGAGGGGTGG 3807 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 40724 CCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCG 40783 |||||||| | || || || ||| ||||| | | | | |||||| || || | | Sbjct 9352 CCATCACCCTGGAGGTTGAGCCCAGCGACACCATCGAGAATGTCAAGGCTAAGATCCAGG 9293 Query 40784 ACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACG 40843 ||||||| ||||| ||| | |||||||| | | |||| || ||||| |||||||| | Sbjct 9292 ACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAG 9233 Query 40844 ACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGC 40903 ||| ||||||||| |||||||||||||||||||| |||| || || || || ||| Sbjct 9232 ACGGCCGCACCCTCTCTGACTACAACATCCAGAAGGAATCCACCCTCCACCTTGTCCTGC 9173 Query 40904 GCTTGAGGGGCGGC 40917 | ||||||| ||| Sbjct 9172 GTCTGAGGGGTGGC 9159 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| || || ||||| || |||||||||||| |||| || || | Sbjct 4324 AAACATGCAGATCTTCGTCAAGACACTCACTGGTAAAACCATCACCCTCGAGGTTGAGCC 4265 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || |||| | | | | | || | || || | ||||| || ||||| || | || Sbjct 4264 CAGTGACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGA 4205 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | | |||| ||| || || |||||||| || | ||||||||| ||||| Sbjct 4204 CCAGCAGAGGTTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 4145 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| || || |||| || || Sbjct 4144 CAACATCCAAAAAGAATCCACCCTCCA 4118 >SEQ16359 Length=2539 Score = 138 bits (152), Expect = 1e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || || ||||| |||||| | || || || || Sbjct 2314 AAGATGCAGATCTTTGTGAAGACCCTGACTGGTAAAACAATCACCCTGGAGGTGGAGCCC 2373 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||||| | | | | | || | ||| || | |||||||| |||||||| | ||| Sbjct 2374 AGCGACACCATCGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCTCCTGAC 2433 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||||| || |||| || || || ||||| || || | ||||||||| ||||||| Sbjct 2434 CAGCAACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACCCTCTCCGACTAC 2493 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAG 40910 ||||||||||||||| |||| || || || ||| |||| |||| Sbjct 2494 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTGAG 2537 >seq1673 Length=142529 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| ||||||||| | || || || ||| | Sbjct 40 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 99 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | || | ||| || | |||||||| |||||||| | |||||| Sbjct 100 GACACCATTGAGAATGTGAAAGCAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAG 159 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || |||||||| || | |||||||| ||||||||| Sbjct 160 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 219 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| |||| || || || ||| |||| Sbjct 220 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCG 254 >seq277 Length=566994 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| | ||||||||||| ||||| ||||| ||||||| || || ||||| Sbjct 257257 GGAGAGCGTGTTGTGGCCTTCGCTGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCT 257316 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| |||||||||||||| ||| |||||||||| Sbjct 257317 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 257376 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 257377 ATCAGCAGAGACGAGG 257392 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| | ||||||||||| ||||| ||||| ||||||| || || ||||| Sbjct 272339 GGAGAGCGTGTTGTGGCCTTCGCTGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCT 272280 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| |||||||||||||| ||| |||||||||| Sbjct 272279 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 272220 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 272219 ATCAGCAGAGACGAGG 272204 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||| || || || || || ||||| || |||||||| || |||| ||| Sbjct 256505 GAGCCGCTGCTGAAAGATAATCCTCGTCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 256564 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||||||||| || |||||||| | |||||||| Sbjct 256565 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACGGCAGAGGAGGT 256617 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||||||| | ||||| ||||||||| | ||||| || || ||||| || || || Sbjct 256865 GGTGGAGCGTTTCACACAGGAAGTGCAGGTGACGGAGGCCCGCTGTTTCTATGGTTTCCA 256924 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| ||| |||||||| ||| Sbjct 256925 GATCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTCCTGATCGACACCTAC 256979 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||||||| | ||||| ||||||||| | ||||| || || ||||| || || || Sbjct 272731 GGTGGAGCGTTTCACACAGGAAGTGCAGGTGACGGAGGCCCGCTGTTTCTATGGTTTCCA 272672 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| ||| |||||||| ||| Sbjct 272671 GATCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTCCTGATCGACACCTAC 272617 Score = 96.9 bits (106), Expect = 4e-15 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||| ||| | ||| |||||||| |||| || | ||| | Sbjct 256695 AGGTGGATCTGTCCAAAGACCTGCAGC-ACTGGGAGACTCTGAAGGAAGAAGAGAAGTAC 256753 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| |||| || |||||||||||||| ||||||||||||||||||||| Sbjct 256754 TTCATCTCACACGTGTTGGCTTTCTTCGCCGCCAGCGATGGCATCGTCAACGAGAATCTG 256813 Query 116804 GT 116805 || Sbjct 256814 GT 256815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515023326540640