Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq49 500 8e-137 seq56 123 2e-23 seq365 96.9 3e-15 >seq49 Length=1117640 Score = 500 bits (554), Expect = 8e-137 Identities = 1076/1594 (68%), Gaps = 39/1594 (2%) Strand=Plus/Minus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 |||||||||| || | | |||| ||||||| ||||||| |||| || | |||||| Sbjct 732461 TCGTTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAAC 732402 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || || |||| || | ||| ||| |||||| ||| | | ||||| || || ||| Sbjct 732401 TCTCCCGACAGAACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTG 732342 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || ||||| ||||| ||||| || || || |||||||| |||| ||| || ||| ||| Sbjct 732341 TTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTC 732282 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | ||| || || | ||||| ||| |||| | ||||||||| ||||||| ||||||| Sbjct 732281 ACGCCATGTTTGGCGATTTTCTCCTTCAGCAGCTTCCAGTCCCAGAGATCGGTCGGCGTC 732222 Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTT 22708 || |||||||| ||||| |||| | ||| || ||||| ||| |||||||| Sbjct 732221 ---TTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACCGGGGAGCCCTCGTACGTC 732165 Query 22709 TCGTACGGACCATATATCG-CGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATAT 22767 ||||| || || | ||| | || || |||||||||||||||| ||| |||| || || Sbjct 732164 TCGTAGGGGCCG-AGCTCGGCCGCCAGCTCGCAGCTCGCCTCCAGAGCGGCGTAGTAAAT 732106 Query 22768 AGTCTCGAAGATTT---TCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACG 22824 || |||||||| | | ||| || || || | | |||||| |||| ||| Sbjct 732105 GGTTTCGAAGATGTGGATGTTGAGCAGTTGAGCCTCTG---GGCTTTCAAACGGGTGACG 732049 Query 22825 CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAG 22884 ||| | | ||| ||||| || | |||||| || || || |||||||| | || | Sbjct 732048 CATGAGAATGAAGGCGTCGGCTAAACCCTGGACTCCGATTCCGATCGGCCTGTGGCGCTT 731989 Query 22885 ATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTT 22944 ||||| | || || || | || || | || ||||| | |||||| ||| Sbjct 731988 GTTCGAGTTCTCGGCTTCCGGTACCGGGTAGTAGTTGATCTCGATAATCTTGTTCAGGTT 731929 Query 22945 TCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCG--ATTGT 23002 | || | | ||| || | | ||| || ||| | ||| | | Sbjct 731928 TTTGACGATTACTTTGGTCACATATGCCAGTTTCTTAAAATC--AAAAGTCCGCTCTGGG 731871 Query 23003 ACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGAC 23062 || || |||||| |||||| ||||| || || || || || |||||||| ||| Sbjct 731870 GTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACCGCTACCTCGTCCTTGCTG 731811 Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 ||||| || ||||||||||| || || ||||| |||||||| ||||||| ||| |||| Sbjct 731810 GTGTATTCAACAATTTCGGTGCACAGGTTGCTGCACTTTATGGTGCCCAGATTCTGCTGG 731751 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 ||||| || | ||||| | || ||||| |||||||| ||||| || ||||| |||| Sbjct 731750 TTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTTCCAGTCTCTGTCTGC 731691 Query 23183 GACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCT 23242 ||||| ||||| || ||||| |||||| | || ||| | | |||| || Sbjct 731690 GACTCAATGATGGCGTACCACAGCTGCTGAGCCTTCACCACACGCTTGGCCTTGCCCTCC 731631 Query 23243 TCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGC 23302 | ||| ||| | ||| | | ||||| || | || | || || |||| || || Sbjct 731630 TTCTCATACCTGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCATCCAGACCAGGG 731571 Query 23303 GATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGA 23362 | | |||||||| ||| ||| || | || || | |||| || ||| Sbjct 731570 CAGGCGTTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGA 731511 Query 23363 TCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTC 23422 || || ||||| | |||||||| || || | ||| | | |||||| || || |||||| Sbjct 731510 TCAGGGATCCACATGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTC 731451 Query 23423 TTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAAC 23482 || |||| |||| ||||| |||||||| ||||| ||||| ||||| | ||| || Sbjct 731450 TTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAGGGCTCTAGGTACATGGCGAAG 731391 Query 23483 GCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTT 23542 || || |||||||| ||||| ||||| |||||||| || |||||||||||||| ||||| Sbjct 731390 GCTCCGGGTCTCTTGTTGCCCCCCTGGTCGACGTAGCGTGCCGTGTTGTTGTAAACTCTC 731331 Query 23543 AGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCTTTT 23599 ||||| || ||||| |||||||| ||| ||| | | ||| ||| | Sbjct 731330 AGCATGGGGACGAGCCCGTTGGAGTTTCCGTTGGTGCCAGAGATGTAGCTC---CCTGTA 731274 Query 23600 GCTCGAACGTTG-TGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCA 23658 | || | | | ||| || | ||| |||||||| | || || || || | || || Sbjct 731273 GATCTGATGCAGCTGACCG-CCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGCACA 731215 Query 23659 TTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACA 23718 || ||||| |||||||||||||| || |||||||| || || | |||| || ||| || Sbjct 731214 CTGCTTCAGCGTGTCGTAGATGCCTTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCA 731155 Query 23719 CGAAGACATTTGCG--CT-TTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775 |||| || | || |||| | |||| ||| || |||||| |||||| || Sbjct 731154 GCTGGACAGCTGAGGCCTGTTGGTCCCAGCG---TTGAAGAGAGTCGGGGAGGCGTGGGT 731098 Query 23776 AAAGTATCCA-TTC---GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCC-TCT 23830 || ||| ||| |||| || ||||| || || || || ||||| || ||| ||| Sbjct 731097 GAA----CCACTTCTCTGACAGCAGGTTGTAGGTCTCAATCGCTGCATCGATATCCGTCT 731042 Query 23831 CCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCG 23890 ||| || || | | ||| | ||| | ||||| || |||| |||| || |||| Sbjct 731041 -TGTGGATTCCTACAGAGACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCG 730983 Query 23891 TTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAG 23950 || || || | ||| || ||||| | || || || || || || ||| ||| || Sbjct 730982 TTGATCTTCAGCAGGTACGAACGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAA 730923 Query 23951 TCACGATCGTGCACTATGGCCGAATTCAAACGGT 23984 || || |||| | ||||| ||| || | |||| Sbjct 730922 TCTCGGTCGTAGATTATGGACGAGTTGAGTCGGT 730889 >seq56 Length=1093683 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || ||| ||||||| ||||| || ||||| | || ||||||| || | ||| | Sbjct 336282 TTTCCACACGTTTCATAAAGAGATCTGGGATCCACATGGCAAAGAACAGGTCTCTGGCTC 336341 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||| ||||| ||||||||||| ||||| |||| ||| || ||||| ||| ||||| Sbjct 336342 TCTGCTCTTCTTTACCGGTGTTCTTCTTCAACTCCAGAAACTCAAACACATCCAAATGCC 336401 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| || || || || || ||||||| Sbjct 336402 ACGGCTCCAGGTACACAGCGAAGGCCCCGGGTCTCT 336437 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 ||||||||||||| ||||| ||||| || || || || || |||||| | || || || Sbjct 335775 CACCTCGTCTTTGCTGGTGTATTCTACGATCTCTGTGCACAGGTTGCTAGATTTGATGGT 335834 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||||| || | ||||| | |||||||| ||||||||||| || Sbjct 335835 GCCCAGATTTTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTACAGCATGTACGGTGT 335894 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || || || ||| ||||||||||| || ||||| Sbjct 335895 CCCGGTTTCTGTCTGTGACTCGATGATGGCGTACCACA 335932 >seq365 Length=500478 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || ||||| ||||| || || || ||||| |||||| |||| ||||| | Sbjct 4325 CAAACATGCAGATCTTCGTCAAGACACTCACTGGTAAAACCATCACCCTCGAGGTTGAGC 4266 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | |||| | || | || ||| | || ||||||||||||| | || || | Sbjct 4265 CCAGTGACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTG 4206 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||| | | || |||||||| || ||| ||||||| || | || | Sbjct 4205 ACCAGCAGAGGTTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACT 4146 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCA 31395 | ||||| ||||||||||| || || || Sbjct 4145 ACAACATCCAAAAAGAATCCACCCTCCA 4118 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || ||||| |||||| | || ||||| || Sbjct 9159 CATGCAGATCTTCGTCAAGACACTCACTGGTAAAACCATCACCCTGGAGGTTGAGCCCAG 9100 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || ||| | || |||||| |||||| | || || || || Sbjct 9099 TGACACCATCGAGAACGTGAAAGCTAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCA 9040 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || ||||||||||| ||| |||| ||| || | || || || Sbjct 9039 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCTGACTACAA 8980 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || ||||| || || || || || || | |||||||| || Sbjct 8979 CATCCAGAAGGAATCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGG 8932 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || || || || || ||||| || |||||| | || || || | Sbjct 9817 CAAACATGCAGATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTAGAGGTGGAGC 9758 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | |||| | || | ||||| | ||| |||||| |||||| | || || | Sbjct 9757 CCAGTGACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAG 9698 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| | | || ||||||||||| ||| ||||||| Sbjct 9697 ACCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGA 9658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445596930758880