Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq49 493 2e-134 seq277 105 8e-18 seq56 89.7 6e-13 >seq49 Length=1117640 Score = 493 bits (546), Expect = 2e-134 Identities = 1301/1969 (66%), Gaps = 39/1969 (2%) Strand=Plus/Minus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| ||||| || ||||| | | |||||| || | || | || ||||| ||||| Sbjct 732473 TTCTTCATCTCCTCGTTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 732414 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | || || ||||| |||| || || || ||||| || || ||||| || | ||| Sbjct 732413 ACGATCTGAAACTCTCCCGACAGAACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 732354 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 732353 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 732294 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | || || || | || | | | |||||| || || || | | ||| | ||| ||| Sbjct 732293 AGGCTGTTCCTCACGCCATGTTTGGCGATTTTCTCCTTCAGCAGCTTCCAGTCCCAGAGA 732234 Query 62565 TCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTA 62617 || | ||| | | ||| || || || || || || ||| | Sbjct 732233 TCGGTCGGCGTCTTCTCCCACATGTCG-------TACTGCAGGATGCCCTTGCTGACCGG 732181 Query 62618 CGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAA 62677 || || | || || || || || || || | || || | || |||||||| | Sbjct 732180 GGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCGGCCGCCAGCTCGCAGCTCGCCTCCAG 732121 Query 62678 TGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATC 62737 || |||| ||||||||||| ||||| | | || || ||| || || ||||| || Sbjct 732120 AGCGGCGTAGTAAATGGTTTCGAAGATGTGGATGTTGAGCAGTTGAGCCTCTGGGCTTTC 732061 Query 62738 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62797 ||| || | | | |||||| || ||||| ||||| || || || || || ||||| || Sbjct 732060 AAACGGGTGACGCATGAGAATGAAGGCGTCGGCTAAACCCTGGACTCCGATTCCGATCGG 732001 Query 62798 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62857 || || | ||| || ||| | || ||||| || | || || || || || || ||||| Sbjct 732000 CCTGTGGCGCTTGTTCGAGTTCTCGGCTTCCGGTACCGGGTAGTAGTTGATCTCGATAAT 731941 Query 62858 TTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCG 62917 || || || ||| |||| ||||||||| ||||| |||||| ||||||||| Sbjct 731940 CTTGTTCAGGTTTTTGACGATTACTTTGGTCACATATGCCAGTTTCTTAAAATCAAAAGT 731881 Query 62918 CCCATCT---ATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTC 62974 || ||| | || ||||||| | || | || ||||| ||||| || |||||||| Sbjct 731880 CCGCTCTGGGGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACCGCTACCTC 731821 Query 62975 AT--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCT 63032 | | || | |||| | || || ||||| || || || ||||| || || || Sbjct 731820 GTCCTTGC--TGGTGTATTCAACAATTTCGGTGCACAGGTTGCTGCACTTTATGGTGCCC 731763 Query 63033 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 63092 | ||| || || || ||||| |||| || || || || || || ||| |||| || ||| Sbjct 731762 AGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTTCCA 731703 Query 63093 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATA-GATT 63150 || || |||| || || || || || | ||| | | || ||||||| | | | | || Sbjct 731702 GTCTCTGTCTGCGACTCAATGATGGCGTACCACAGCTGCT-GAGCCTTCACCACACGCTT 731644 Query 63151 TGTATCTCCTTTCTCTTTCGTA--TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAAC 63208 | | || | || | || || | | ||| | || || ||||| || ||||| Sbjct 731643 GGCCTTGCCCTCCT-TCTCATACCTGGTGTAGAGCTTC--TCAAACTCCTCCCCCCAGCA 731587 Query 63209 ATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 63268 | |||| | ||| || | | |||||||||| ||||| || || || ||| Sbjct 731586 CTCATCCAGACCAGGGCAGGCGTTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCAC 731527 Query 63269 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTT 63327 || ||||| || |||||||| ||||| | || || ||| || ||||| | || || | Sbjct 731526 TCTCTTCATGAACAGATCAGGGATCCACATGGCGTAGAAA-AGGTCTCTGGCCCTCTGCT 731468 Query 63328 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 63387 |||| |||||||| ||||| || || || ||||| | | | ||| | ||||| || | Sbjct 731467 CCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAGGGCT 731408 Query 63388 CCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 63447 | | ||| ||||| | |||| || | ||||| || ||||| || | ||| | || | Sbjct 731407 CTAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCCCCCTGGTCGACGTAGCGTGCCG 731348 Query 63448 TGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGA 63507 |||| || |||||||||| ||| || | | ||||| || | || ||||| || |||| Sbjct 731347 TGTTGTTGTAAACTCTCAGCATGGGGACGAGCCCGTTGGAGTTTCCGTTGGTGCCAGAGA 731288 Query 63508 TATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 63567 | |||| || | | | || || | | | ||| || || || || || | Sbjct 731287 TGTAGCTCCCTGTAGATCTGATGCAGCTGACCGCCACACCGATGCCTCCAGCTGACTTGG 731228 Query 63568 AGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGT 63627 |||| | || || | || | |||||| ||||||||||| ||||| || || ||||| Sbjct 731227 AGATGAGGGCACACTGCTTCAGCGTGTCGTAGATGCCTTCAATGCTGTCGTCCTTCATGG 731168 Query 63628 TAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAG 63687 || || || ||||| |||| || | | | || || || || || | || || | Sbjct 731167 CGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTCCCAGCGTTGAAGAGAGTCGGGG 731108 Query 63688 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 63747 | ||||| || ||||| || || || || || ||||| |||||||| |||| || |||| Sbjct 731107 AGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCAATCGCTGCATCGATAT 731048 Query 63748 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTT 63807 || | || |||||||| | ||| | ||| | ||||||||| |||| || | | || Sbjct 731047 CCGTCTTGTGGATTCCTACAGAGACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTT 730988 Query 63808 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 63867 || ||| || |||| || ||| || |||| ||| || || || || ||||||| | Sbjct 730987 TGCCGTTGATCTTCAGCAGGTACGAACGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGG 730928 Query 63868 AAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATAT 63927 | || ||||| ||||| || || ||| ||||| || || | || ||| || | Sbjct 730927 AGAAATCTCGGTCGTAGATTATGGACGAGTTGAGTCGGTCTTTGTTTTCTAGAACGATGT 730868 Query 63928 CCATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTA--GGATTAACATAGT 63984 | | || | ||| || || || || || || | | || | || || | |||| Sbjct 730867 CAAGCGT-CTCCTTGGAGATCATAGGTGA--GTGGCGTTTGTTCAGGGGGTTGATGTAGT 730811 Query 63985 TGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATA 64044 || | | ||||||||||| || || || | ||| || || || ||||| || || || | Sbjct 730810 TGTACAGGTCCTCCATCACGTCGCTGAACACTTTCTTAGTCTCTTTGTGCAGGTTGGAGA 730751 Query 64045 TGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTA 64104 ||| || | || || || ||||| || || || |||| || || ||||| || | Sbjct 730750 CGGCGATCCGAGCAGCGAGGATGGCGTAGTCGGGGTGTTTAGTTGTGAGCGTGGCAGCGA 730691 Query 64105 TTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAA 64164 | || |||||||| ||||| | || || || || ||||| | || | || || || | Sbjct 730690 TCTCTGCTGCCAGCGTGTCGAGCTCCACAGTGGTGACTCCGCTGTACAGACCCTGGATCA 730631 Query 64165 CCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTC 64224 ||||||| | || | || || | | || | ||| | || ||||| || ||| Sbjct 730630 CCTTCATGGTGATCTGGGCCGGGTCCACAAAGTCAGAGTTCAGCCCGTAGCA-AAGCTTC 730572 Query 64225 T-AATACGAGACGTGATTTTATCAAACATGACATTTTCCTTGTATCCAT 64272 | || ||||| |||||||| || |||||||| ||||| | ||||| Sbjct 730571 TGGATGCGAGAGGTGATTTTGTCGAACATGACGCGTTCCTGGCGTCCAT 730523 >seq277 Length=566994 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || || |||||||| ||||| | ||| | Sbjct 257392 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 257333 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| |||||| || || || ||||||||||| || || ||||| |||| Sbjct 257332 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGG 257273 Query 33724 CAATAAGTCTCTCTCC 33739 | | || | |||||| Sbjct 257272 CCACAACACGCTCTCC 257257 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || || |||||||| ||||| | ||| | Sbjct 272204 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 272263 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| |||||| || || || ||||||||||| || || ||||| |||| Sbjct 272264 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGG 272323 Query 33724 CAATAAGTCTCTCTCC 33739 | | || | |||||| Sbjct 272324 CCACAACACGCTCTCC 272339 >seq56 Length=1093683 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 || || ||||| || || ||| | || |||| |||||| ||||| | || |||| Sbjct 335228 TAGGTTTCATAAGGGCCGACCTCAGCTGCCAGTTCACAACTGGCCTCCAGAGCGGCGTAG 335287 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 || ||||| |||||||||| | || || || || || ||||| |||||||||||| Sbjct 335288 TAGATGGTCTCAAAGATCTGAATGTTGAGTAACTGGGCCTCTGGGCTTTCAAATGGATAA 335347 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 | || || || || || || | ||| || ||||| || || || || || || | | Sbjct 335348 CGCATAAGGATGAAGGCATCAGCCAGTCCCTGCACACCGATTCCAATTGGCCTGTGACGC 335407 Query 62808 TTATTAGAGATTTCAGC 62824 || ||||| ||||||| Sbjct 335408 TTGTTAGAATTTTCAGC 335424 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || || || ||||| || || |||||| ||| | || || || |||||||||| Sbjct 334328 TCCAACCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTTGGCTCAGCAATATGGATAT 334387 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||| || || || || ||| |||| || | ||||| ||||| || | | |||| Sbjct 334388 TTAGAGACTGGCTCTGGTCAATGTAGGCACCGCGATCTGCCGCCATCTTGAGAACTGTCT 334447 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 62281 | || | |||||||| | |||||||| |||| |||| | ||| || || Sbjct 334448 TCTGGGAGATTTCCCAGACTGTTTTATACAACT-GCTTCAGATCATCGGG 334496 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| || | ||| || ||||| ||||| || || || | || || | || || || | Sbjct 338076 CACTGAACACTTTCTTGGTTTCTTTGTGCAGGTTAGAAACTGCGATCCGTGCAGCCAGGA 338135 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 | ||||| || ||||||| || || ||||| ||| | || |||||||||||||||| Sbjct 338136 TTGCATAGTCAGGATGTTTAGTGGTGAGGGTGGCCGCTGTCTCTGCTGCCAGAGTGTCCA 338195 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 || || || || |||||| | || | || || || |||||||| Sbjct 338196 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 338241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629578159093920