Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq49 522 3e-143 seq56 96.9 5e-15 >seq49 Length=1117640 Score = 522 bits (578), Expect = 3e-143 Identities = 1323/1995 (66%), Gaps = 29/1995 (1%) Strand=Plus/Minus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 |||||||||||| | || || | | ||||| ||||| || ||||| | | ||| Sbjct 732504 CTGAATGGATCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGTTCCACAGTCCTCT 732445 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 ||| || | || | || ||||| || || || | ||||| ||||| |||| || || Sbjct 732444 CTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCCGACAGAACCCT 732385 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || ||||| || || ||||| || | ||| | ||||| || || |||| || || || Sbjct 732384 GCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 732325 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326 || || || || ||||| || |||| || | || || || | || | | | ||| Sbjct 732324 GGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGAT 732265 Query 65327 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 65386 ||| || || || | | ||| | ||| ||||| | ||| | | Sbjct 732264 TTTCTCCTTCAGCAGCTTCCAGTCCCAGAGATCGGTCGG--CGTCTTCTCCCACATGTCG 732207 Query 65387 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 65444 | || || || || || ||| | || || | || || ||||| || || || Sbjct 732206 TACTGCAGGATGCCCTTGCTGACCGGGGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCG 732147 Query 65445 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 65504 | || || || || |||||||| | || |||| ||||||||||||||||| | | Sbjct 732146 GCCGCCAGCTCGCAGCTCGCCTCCAGAGCGGCGTAGTAAATGGTTTCGAAGATGTGGATG 732087 Query 65505 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 65564 || || ||| || || |||| ||||| || | | | |||||| || ||||| ||| Sbjct 732086 TTGAGCAGTTGAGCCTCTGGGCTTTCAAACGGGTGACGCATGAGAATGAAGGCGTCGGCT 732027 Query 65565 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 65624 || || || || || || ||||| || || || | ||| || ||| | || ||||| || Sbjct 732026 AAACCCTGGACTCCGATTCCGATCGGCCTGTGGCGCTTGTTCGAGTTCTCGGCTTCCGGT 731967 Query 65625 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 65684 | || || || || || || ||||| || || || ||| |||| ||||||||| |||| Sbjct 731966 ACCGGGTAGTAGTTGATCTCGATAATCTTGTTCAGGTTTTTGACGATTACTTTGGTCACA 731907 Query 65685 TCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTATTACAAACATGTTCAATGCAACA 65741 | |||||| ||||||||| ||||| | || ||||||| | || | Sbjct 731906 TATGCCAGTTTCTTAAAATCAAAAGTCCGCTCTGGGGTGACGTACATGTTGAGGGCGATG 731847 Query 65742 GATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGC 65799 || ||||| ||||| || |||||||| | | || | |||| | || || |||| Sbjct 731846 GAGGCCAGGTTACAGACCGCTACCTCGTCCTTGC--TGGTGTATTCAACAATTTCGGTGC 731789 Query 65800 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 65859 | || || || ||||| ||||| || | ||| || || || ||||| |||| || || | Sbjct 731788 ACAGGTTGCTGCACTTTATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 731729 Query 65860 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919 | || || || ||| |||| || ||||| || |||| || || || || || | ||| | Sbjct 731728 CTTTGTACAGCATGTATGGCGTTCCAGTCTCTGTCTGCGACTCAATGATGGCGTACCACA 731669 Query 65920 -CGACTCGAGCCTTTATTATA-GATTTGTATCTCTTTTCTCTTTCGTA--TAGTGTATAC 65975 | || ||||||| | | | | || | | | | || | || || | ||||| | Sbjct 731668 GCTGCT-GAGCCTTCACCACACGCTTGGCCTTGCCCTCCT-TCTCATACCTGGTGTAGAG 731611 Query 65976 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATC 66035 || || ||||| || ||||| | |||| ||||| || | | ||||||||| Sbjct 731610 CTTC--TCAAACTCCTCCCCCCAGCACTCATCCAGACCAGGGCAGGCGTTGGGACACATC 731553 Query 66036 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC- 66094 | ||||| || || || ||||| ||||| || |||||||| ||||| | || Sbjct 731552 AGAGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGATCAGGGATCCACATGGCG 731493 Query 66095 TATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 66154 || ||| | ||||||| || || ||||| |||||||| ||||| || || || ||||| Sbjct 731492 TAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAA 731434 Query 66155 CGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 66214 | | | ||| | ||||| || || | ||| ||||| | |||| || | ||||| Sbjct 731433 GTCGAACACGTCAAAGTGCCAGGGCTCTAGGTACATGGCGAAGGCTCCGGGTCTCTTGTT 731374 Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 || ||||| || | ||| | || ||||| || |||||||||| ||| || | | || Sbjct 731373 GCCCCCCTGGTCGACGTAGCGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGAGCCC 731314 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||||| | || ||||| || ||||| ||||| || | | | || || | | Sbjct 731313 GTTGGAGTTTCCGTTGGTGCCAGAGATGTAGCTCCCTGTAGATCTGATGCAGCTGACCGC 731254 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || || || || || ||||| | || || | || | ||| || ||||| Sbjct 731253 CACACCGATGCCTCCAGCTGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAGAT 731194 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 66454 ||| || || || || ||| ||||| || || || ||||| |||| || | | | Sbjct 731193 GCCTTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTT 731134 Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 || || || || || | || || || ||||| || ||||| || || || || || || Sbjct 731133 GGTCCCAGCGTTGAAGAGAGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTT 731074 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||| |||||||| |||| || |||||| | || |||||||| | ||| | ||| | Sbjct 731073 GTAGGTCTCAATCGCTGCATCGATATCCGTCTTGTGGATTCCTACAGAGACTCTCATGAG 731014 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 ||||||||| |||| || | | ||| ||| || |||| || ||| || |||| Sbjct 731013 CATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAGCAGGTACGAACGCTCCAG 730954 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 66694 ||| || || || || ||||||| || || ||||| ||||| || || ||||||||| Sbjct 730953 AGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCGGTCGTAGATTATGGACGAGTTGAG 730894 Query 66695 TTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAATGTT 66753 | || || | || ||| | || | || | ||| || || || || || || Sbjct 730893 TCGGTCTTTGTTTTCTAGAACGATGTCAAGCGT-CTCCTTGGAGATCATAGGTGA--GTG 730837 Query 66754 TCCCATTTTTA--GGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 66811 | | || | || |||| |||||| | | ||||||||||| || || || | ||| Sbjct 730836 GCGTTTGTTCAGGGGGTTGATGTAGTTGTACAGGTCCTCCATCACGTCGCTGAACACTTT 730777 Query 66812 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGG 66871 || || |||||||| || || || ||||| || | ||| || | ||||| || || || Sbjct 730776 CTTAGTCTCTTTGTGCAGGTTGGAGACGGCGATCCGAGCAGCGAGGATGGCGTAGTCGGG 730717 Query 66872 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGT 66931 |||| || || ||||| || || || |||||||| ||||| | || || || || Sbjct 730716 GTGTTTAGTTGTGAGCGTGGCAGCGATCTCTGCTGCCAGCGTGTCGAGCTCCACAGTGGT 730657 Query 66932 TACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 66991 ||||| | || | || ||||| |||||||| | || | || || | | || Sbjct 730656 GACTCCGCTGTACAGACCCTGGATCACCTTCATGGTGATCTGGGCCGGGTCCACAAAGTC 730597 Query 66992 AGTGTTTAAGCCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGACAT 67050 || ||| | || || || || |||| || ||||| |||||||| || |||||||| Sbjct 730596 AGAGTTCAGCCCGTAGCA-AAGCTTCTGGATGCGAGAGGTGATTTTGTCGAACATGACGC 730538 Query 67051 TTTCCTTGTATCCAT 67065 ||||| | ||||| Sbjct 730537 GTTCCTGGCGTCCAT 730523 >seq56 Length=1093683 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| || ||||||||||| || || || || || || | || || | | Sbjct 338076 CACTGAACACTTTCTTGGTTTCTTTGTGCAGGTTAGAAACTGCGATCCGTGCAGCCAGGA 338135 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | ||||| || ||||||| || || ||||| ||| | || |||||||||||||||| Sbjct 338136 TTGCATAGTCAGGATGTTTAGTGGTGAGGGTGGCCGCTGTCTCTGCTGCCAGAGTGTCCA 338195 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 || || || || |||||| | || | || ||||| |||||||| Sbjct 338196 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 338241 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || ||||| || || |||||| ||| | || || || |||||||||| Sbjct 334328 TCCAACCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTTGGCTCAGCAATATGGATAT 334387 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||| || || || || ||| |||| || | ||||| ||||| || | | |||| Sbjct 334388 TTAGAGACTGGCTCTGGTCAATGTAGGCACCGCGATCTGCCGCCATCTTGAGAACTGTCT 334447 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 65074 | || | |||||||| | |||||||| |||| |||| | ||| || || Sbjct 334448 TCTGGGAGATTTCCCAGACTGTTTTATACAACT-GCTTCAGATCATCGGG 334496 Score = 84.2 bits (92), Expect = 3e-11 Identities = 125/177 (71%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 65444 CTCAGCT---AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTT 65500 ||||||| ||||||||||| ||||| | || |||| || ||||| || ||||||| Sbjct 335248 CTCAGCTGCCAGTTCACAACTGGCCTCCAGAGCGGCGTAGTAGATGGTCTCAAAGATCTG 335307 Query 65501 CTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTC 65560 | || || || || || |||| |||||||||||| | || || || || || Sbjct 335308 AATGTTGAGTAACTGGGCCTCTGGGCTTTCAAATGGATAACGCATAAGGATGAAGGCATC 335367 Query 65561 TGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGC 65617 || | ||| || ||||| || || || || || || | ||| ||||| ||||||| Sbjct 335368 AGCCAGTCCCTGCACACCGATTCCAATTGGCCTGTGACGCTTGTTAGAATTTTCAGC 335424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657922579155760