Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value SEQ16359 123 2e-23 seq1673 116 4e-21 seq510 111 2e-19 seq365 86.0 6e-12 >SEQ16359 Length=2539 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || ||||| || || ||||| || ||| | |||| Sbjct 2532 ACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACC 2473 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| ||||||||| |||||||||||||||| || ||||| ||||||||||| Sbjct 2472 ATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGCTGGTCAGGAGGGATGCCTTCTTT 2413 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| ||| ||| | | || | |||||| ||||||||||||| | ||| | Sbjct 2412 GTCCTGGATCTTTGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGAT 2353 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || |||| || || || || || ||||| Sbjct 2352 TGTTTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 2317 >seq1673 Length=142529 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || | ||| | || ||||| || || ||||| || || | Sbjct 266 CCTCCACGGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 207 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| ||||||||| ||||||| | ||||| || ||||| Sbjct 206 AGGGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 147 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| ||| ||| | | || | |||||| ||||||||||| Sbjct 146 ATGCCTTCTTTGTCTTGGATCTTTGCTTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 87 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| || | || || || || || ||||| Sbjct 86 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 40 >seq510 Length=807390 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| ||||||||| |||||||||||||||| || ||||| |||||||||||||| | Sbjct 1575 AGCTGCTTACCAGCAAAGATCAGACGTTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGG 1634 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || ||| ||| | | || | |||||| ||||||||||||| | ||| | || || Sbjct 1635 ATCTTTGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATTGTTTTA 1694 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||| || || || || || ||||| Sbjct 1695 CCAGTCAGGGTCTTCACAAAGATCTGCAT 1723 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| ||||||||| |||||||||||||||| || ||||| |||||||||||||| | Sbjct 4235 AGCTGCTTACCAGCAAAGATCAGACGTTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGG 4294 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || ||| ||| | | || | |||||| ||||||||||||| | ||| | || || Sbjct 4295 ATCTTTGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATTGTTTTA 4354 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||| || || || || || ||||| Sbjct 4355 CCAGTCAGGGTCTTCACAAAGATCTGCAT 4383 >seq365 Length=500478 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || ||||| |||||| | ||||| || || || |||||||||||| Sbjct 9658 TCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTG 9717 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| || | | || | ||||| ||||||||||||| | ||| | Sbjct 9718 TCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATG 9777 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | ||||| || || || ||||| Sbjct 9778 GTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCAT 9812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495875408868800