Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq49 509 2e-139 seq56 102 1e-16 seq277 93.3 6e-14 >seq49 Length=1117640 Score = 509 bits (564), Expect = 2e-139 Identities = 1323/1997 (66%), Gaps = 33/1997 (2%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 |||||||||||| | || || | | || || ||||| || ||||| | | ||| Sbjct 732504 CTGAATGGATCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGTTCCACAGTCCTCT 732445 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || | || | || |||||||| || || | ||||| ||||| |||| || || Sbjct 732444 CTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCCGACAGAACCCT 732385 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| || | ||| | ||||| || || |||| || || || Sbjct 732384 GCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 732325 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 || || || || ||||| || |||| || || || || || | |||||| ||| Sbjct 732324 GGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGAT 732265 Query 71289 TTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNN 71347 ||| || || || || |||| | | ||| ||||| | || Sbjct 732264 TTTCTCCTTCAGCAGCTTCC-AGTCCCAGAGATCGGTCGGCGTCTTCTCCCACATGTCGT 732206 Query 71348 NNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTT 71407 ||||| || || | || || | || || ||||| || || | Sbjct 732205 ACTGCAGGATGCCCTTGCTGACCGGGGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCGG 732146 Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 | || || || || |||||||| | || | || |||||||||||||| || | | | Sbjct 732145 CCGCCAGCTCGCAGCTCGCCTCCAGAGCGGCGTAGTAAATGGTTTCGAAGATGTGGATGT 732086 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 |||| ||| || || ||||| ||||| || | | | |||||| || ||||| |||| Sbjct 732085 TGAGCAGTTGAGCCTCTGGGCTTTCAAACGGGTGACGCATGAGAATGAAGGCGTCGGCTA 732026 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 | || || || || || ||||| || ||||| | ||| || || | || ||||| || | Sbjct 732025 AACCCTGGACTCCGATTCCGATCGGCCTGTGGCGCTTGTTCGAGTTCTCGGCTTCCGGTA 731966 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647 || || || || || || ||||| || || || ||| |||| ||||||||| ||||| Sbjct 731965 CCGGGTAGTAGTTGATCTCGATAATCTTGTTCAGGTTTTTGACGATTACTTTGGTCACAT 731906 Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCT---ATTACAAACACGTTCAAGGCAACAG 71704 ||||| ||||||||| ||| ||| | || ||| ||| | ||| | | Sbjct 731905 ATGCCAGTTTCTTAAAATCAAAAGTCCGCTCTGGGGTGACGTACATGTTGAGGGCGATGG 731846 Query 71705 ATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCA 71762 | ||||| ||||| || |||||||| | | || || |||| | |||||| ||||| Sbjct 731845 AGGCCAGGTTACAGACCGCTACCTCGTCCTTGC--TGGTGTATTCAACAATTTCGGTGCA 731788 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 || || || ||||| ||||| || | ||| || || || ||||| |||| || || || Sbjct 731787 CAGGTTGCTGCACTTTATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTC 731728 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 71881 || || || || | || || ||||| || |||| || || || || || | ||| | Sbjct 731727 TTTGTACAGCATGTATGGCGTTCCAGTCTCTGTCTGCGACTCAATGATGGCGTACCACAG 731668 Query 71882 CGACTCGAGCCTTTATTATATTCTTG---TATCTCT-TTTCTCTTTCGTATTGTGTATAT 71937 | || ||||||| | | | |||| | | || ||||| | | | ||||| | Sbjct 731667 CTGCT-GAGCCTTCACCACACGCTTGGCCTTGCCCTCCTTCTCATAC--CTGGTGTAGAG 731611 Query 71938 AATCGTTCGAACTCGTCTCCCCAAGCA-TTGTCTAATCCAGGACATTCATTCGGACACAT 71996 || || ||||| || |||| |||| | || | ||||| || | || |||||||| Sbjct 731610 CTTC--TCAAACTCCTC-CCCCCAGCACTCATCCAGACCAGGGCAGGCGTTGGGACACAT 731554 Query 71997 CAATGACCACT-CTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 72055 || ||||| | || | || | |||| ||||| || |||||||| ||||| | | Sbjct 731553 CAGAGACCAGTCCTGGTTGCTC-TCCACTCTCTTCATGAACAGATCAGGGATCCACATGG 731495 Query 72056 C-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114 | || ||| || ||||||| || |||||||| |||||||| ||||| || || || ||| Sbjct 731494 CGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGG 731436 Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTG 72174 || | | | ||| | ||||| || || | ||| ||||| | |||| || | ||| Sbjct 731435 AAGTCGAACACGTCAAAGTGCCAGGGCTCTAGGTACATGGCGAAGGCTCCGGGTCTCTTG 731376 Query 72175 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 72234 || || ||||| || | ||| | || ||||| || |||||||||| ||| || | | Sbjct 731375 TTGCCCCCCTGGTCGACGTAGCGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGAGC 731316 Query 72235 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATT 72294 || ||||| || ||||| || ||||| ||||| || | | | || ||| | Sbjct 731315 CCGTTGGAGTTTCCGTTGGTGCCAGAGATGTAGCTCCCTGTAGATCTGATGCAGCTGACC 731256 Query 72295 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 72354 | | ||| || || || || || ||||| | || || | || | ||| || ||| Sbjct 731255 GCCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAG 731196 Query 72355 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 72414 ||||| || || || || ||| ||||| || || || ||||| |||| || | | Sbjct 731195 ATGCCTTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTG 731136 Query 72415 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA 72474 | || || || || || | || || || ||||| || ||||| || || ||||| || Sbjct 731135 TTGGTCCCAGCGTTGAAGAGAGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGG 731076 Query 72475 TTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATT 72534 ||||| |||||||| |||| || |||||| | || |||||||| | ||| | ||| Sbjct 731075 TTGTAGGTCTCAATCGCTGCATCGATATCCGTCTTGTGGATTCCTACAGAGACTCTCATG 731016 Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCC 72594 | ||| ||||| |||| || | | ||| || || |||| || ||| || ||| Sbjct 731015 AGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAGCAGGTACGAACGCTCC 730956 Query 72595 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 72654 | ||| || || || || ||||||| || || ||||| ||||| || || ||| ||| Sbjct 730955 AGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCGGTCGTAGATTATGGACGAGTTG 730896 Query 72655 AGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATG 72713 ||| || || | || ||| || || | || | ||| || || || || || | Sbjct 730895 AGTCGGTCTTTGTTTTCTAGAACGATGTCAAGCGT-CTCCTTGGAGATCATAGGTGA--G 730839 Query 72714 TTTCCCATTTTTA--GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 72771 | | | || | || || | |||||| | | ||||||||||| || || || | | Sbjct 730838 TGGCGTTTGTTCAGGGGGTTGATGTAGTTGTACAGGTCCTCCATCACGTCGCTGAACACT 730779 Query 72772 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831 || || || || ||||| || || || ||||| || | || || || ||||| || || Sbjct 730778 TTCTTAGTCTCTTTGTGCAGGTTGGAGACGGCGATCCGAGCAGCGAGGATGGCGTAGTCG 730719 Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891 || |||| || || ||||| || || ||||||||||| ||||| | || || || Sbjct 730718 GGGTGTTTAGTTGTGAGCGTGGCAGCGATCTCTGCTGCCAGCGTGTCGAGCTCCACAGTG 730659 Query 72892 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGA 72951 || ||||| | || | || ||||| |||||||| | || | || || | | Sbjct 730658 GTGACTCCGCTGTACAGACCCTGGATCACCTTCATGGTGATCTGGGCCGGGTCCACAAAG 730599 Query 72952 TCAGTGTTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATAAC 73010 |||| ||| | || || || || |||| || ||||| |||||||| || ||||| || Sbjct 730598 TCAGAGTTCAGCCCGTAGCA-AAGCTTCTGGATGCGAGAGGTGATTTTGTCGAACATGAC 730540 Query 73011 ATTTTCCCGGCATCCAT 73027 |||| ||| ||||| Sbjct 730539 GCGTTCCTGGCGTCCAT 730523 >seq56 Length=1093683 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || ||||| ||||| || || || || || || | || || || | Sbjct 338076 CACTGAACACTTTCTTGGTTTCTTTGTGCAGGTTAGAAACTGCGATCCGTGCAGCCAGGA 338135 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | ||||| || ||||||| || || ||||| ||| | ||||||||||||||||||| Sbjct 338136 TTGCATAGTCAGGATGTTTAGTGGTGAGGGTGGCCGCTGTCTCTGCTGCCAGAGTGTCCA 338195 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || |||||| | || | || ||||| |||||||| Sbjct 338196 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 338241 Score = 86.0 bits (94), Expect = 8e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 71410 GCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTG 71469 || ||||||||||| ||||| | || | || || ||||| || || |||| | ||| Sbjct 335255 GCCAGTTCACAACTGGCCTCCAGAGCGGCGTAGTAGATGGTCTCAAAGATCTGAATGTTG 335314 Query 71470 AGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 71529 || || || || ||||| |||||||||||| | || || || || || || | | Sbjct 335315 AGTAACTGGGCCTCTGGGCTTTCAAATGGATAACGCATAAGGATGAAGGCATCAGCCAGT 335374 Query 71530 CCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGC 71579 || || || || || || || || ||||| | ||| |||||| ||||||| Sbjct 335375 CCCTGCACACCGATTCCAATTGGCCTGTGACGCTTGTTAGAATTTTCAGC 335424 >seq277 Length=566994 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||||| || || || |||||||| ||||| | ||| | Sbjct 257392 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 257333 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| ||||||||||| || || || || |||| Sbjct 257332 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGG 257273 Query 42207 CAATAAGTCTCTCTCC 42222 | | || | |||||| Sbjct 257272 CCACAACACGCTCTCC 257257 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||||| || || || |||||||| ||||| | ||| | Sbjct 272204 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 272263 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| ||||||||||| || || || || |||| Sbjct 272264 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGG 272323 Query 42207 CAATAAGTCTCTCTCC 42222 | | || | |||||| Sbjct 272324 CCACAACACGCTCTCC 272339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670884049654640