Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value SEQ16359 161 2e-34 seq1673 161 2e-34 seq365 152 1e-31 seq510 127 5e-24 >SEQ16359 Length=2539 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104337 CTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAG 104396 |||| || | || || || || | || || || ||||| || || ||||| || || | Sbjct 2539 CTCTCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGG 2480 Query 104397 TTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTC 104456 | | ||| |||||||| || || |||||||| || || | || || |||||||| || | Sbjct 2479 TGCGACCATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGCTGGTCAGGAGGGATGC 2420 Query 104457 CTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTA 104516 ||||||| ||||| ||||||||||| ||||| || | ||| ||||| || || ||||| | Sbjct 2419 CTTCTTTGTCCTGGATCTTTGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCA 2360 Query 104517 GTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || |||||||| || || || ||||| |||||||| ||| Sbjct 2359 GGGTGATTGTTTTACCAGTCAGGGTCTTCACAAAGATCTGCATCTTG 2313 >seq1673 Length=142529 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||||| || || | || ||||| || || || ||| Sbjct 236 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTACCA 177 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || |||||||| || |||||||| || || ||||||||||| Sbjct 176 GCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTGCTTTC 117 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||||| || || ||||| || || || ||||| ||||| || || Sbjct 116 ACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 57 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 56 TTCACAAAGATCTGCAT 40 >seq365 Length=500478 Score = 152 bits (168), Expect = 1e-31 Identities = 176/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 104326 ATTTATT--CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 ||||||| || || || || | || || || || | || ||||| ||||| || || Sbjct 3798 ATTTATTGACCACCCCTCAGACGCAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTG 3857 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 |||||||| || || | || ||||| || || || |||||||| || | |||||| || Sbjct 3858 TAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGG 3917 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 ||||| || || || || || ||||| ||||| || || ||||| || | ||| || || Sbjct 3918 TCAGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCACTG 3977 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || || || ||||||||||| ||||| || ||||| |||||||| Sbjct 3978 GGCTCCACCTCCAGGGTGATGGTCTTACCAGTGAGTGTCTTGACAAAGATCTGCAT 4033 >seq510 Length=807390 Score = 127 bits (140), Expect = 5e-24 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || |||||||| || || | || || |||||||| || |||||||| ||||| Sbjct 1575 AGCTGCTTACCAGCAAAGATCAGACGTTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGG 1634 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||||||||| ||||| || | ||| ||||| || || ||||| || || || || ||| Sbjct 1635 ATCTTTGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATTGTTTTA 1694 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| |||||||| ||| Sbjct 1695 CCAGTCAGGGTCTTCACAAAGATCTGCATCTTG 1727 Score = 127 bits (140), Expect = 5e-24 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || |||||||| || || | || || |||||||| || |||||||| ||||| Sbjct 4235 AGCTGCTTACCAGCAAAGATCAGACGTTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGG 4294 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||||||||| ||||| || | ||| ||||| || || ||||| || || || || ||| Sbjct 4295 ATCTTTGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATTGTTTTA 4354 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| |||||||| ||| Sbjct 4355 CCAGTCAGGGTCTTCACAAAGATCTGCATCTTG 4387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150949723791112