Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1673 123 2e-23 SEQ16359 111 1e-19 seq365 89.7 4e-13 >seq1673 Length=142529 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| || || ||||||||||| || ||||||||||| | | Sbjct 266 CCTCCACGGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 207 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || || || ||| | || |||| ||| ||||| ||| Sbjct 206 AGGGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 147 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || |||||| ||||| | | | ||||||| ||||||| Sbjct 146 ATGCCTTCTTTGTCTTGGATCTTTGCT--TTCACATTCTCAATGGTGTCGCTGGGCTCCA 89 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || || || || || ||||| |||||||| Sbjct 88 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 40 >SEQ16359 Length=2539 Score = 111 bits (122), Expect = 1e-19 Identities = 157/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| || || ||||||||||| || ||||||||||||| | ||| | || Sbjct 2529 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATC 2470 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 || | || || || ||| | || || || || ||||| ||| | ||| |||||||| Sbjct 2469 TTCTAGCTGCTTACCAGCAAAGATCAGACGTTGCTGGTCAGGAGGGATGCCTTCTTTGTC 2410 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || |||||| ||||| | | | ||||||| ||||||| |||| |||||| Sbjct 2409 CTGGATCTTTGCT--TTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATT 2352 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||||| || ||||| || || ||||| |||||||| ||| Sbjct 2351 GTTTTACCAGTCAGGGTCTTCACAAAGATCTGCATCTTG 2313 >seq365 Length=500478 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| ||||| || ||||||||||| | | ||| | | || |||| || Sbjct 3831 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 3890 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || | || ||| ||||| || | |||||| ||||| || || Sbjct 3891 TTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTA 3950 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | ||||| | ||||||| |||| ||||||||| || || | Sbjct 3951 GC--CTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAG 4008 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || |||||||| |||||||| Sbjct 4009 TGAGTGTCTTGACAAAGATCTGCAT 4033 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| ||||| || ||||||||||| | | ||| | ||||||||| || Sbjct 8956 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCCAGCTGC 9015 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || | || ||| || || || | ||| |||||||| || || Sbjct 9016 TTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTA 9075 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| ||||| | | | ||||| | |||||| |||| |||||||||||| || | Sbjct 9076 GCT--TTCACGTTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTACCAG 9133 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || |||||||| Sbjct 9134 TGAGTGTCTTGACGAAGATCTGCAT 9158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404937845777860