Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value SEQ16359 114 1e-20 seq1673 100 2e-16 seq365 100 2e-16 >SEQ16359 Length=2539 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| |||||| | ||||| | || |||||| | Sbjct 2317 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAAACAATCACCCTGGAGGTGGAGCCCAGC 2376 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| |||| ||| ||| ||||||||||| || || |||||||| Sbjct 2377 GACACCATCGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAG 2436 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || || || ||||||||| |||||| | ||| ||||| Sbjct 2437 CAACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACCCTCTCCGACTACAAC 2496 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAG 25221 || || || || ||||| || || | ||||| | || |||| Sbjct 2497 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTGAGAG 2539 >seq1673 Length=142529 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || |||||| | Sbjct 40 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 99 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| |||| ||| ||| ||||||||||| || || |||||||| Sbjct 100 GACACCATTGAGAATGTGAAAGCAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAG 159 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || || || | ||||||| ||||| || || ||||| Sbjct 160 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 219 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || || || || ||||| || || | ||||| | || | |||||||| || Sbjct 220 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTCCGTGGAGGAAACTA 272 >seq365 Length=500478 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || |||||| ||||||| |||| || ||| | | Sbjct 4320 ATGCAGATCTTCGTCAAGACACTCACTGGTAAAACCATCACCCTCGAGGTTGAGCCCAGT 4261 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| |||| || ||| ||||| ||||| ||||| |||||||| Sbjct 4260 GACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 4201 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || || || || | ||||||| ||||| | || ||||| Sbjct 4200 CAGAGGTTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 4141 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || |||||||||||||| || || Sbjct 4140 ATCCAAAAAGAATCCACCCTCCA 4118 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || |||||| ||||||| | || || ||| | | Sbjct 9158 ATGCAGATCTTCGTCAAGACACTCACTGGTAAAACCATCACCCTGGAGGTTGAGCCCAGT 9099 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| |||| || ||| ||||||||||| ||||| || || || Sbjct 9098 GACACCATCGAGAACGTGAAAGCTAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAG 9039 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || ||||| || | || || | ||||| | || ||||| Sbjct 9038 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCTGACTACAAC 8979 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || |||||||| || || Sbjct 8978 ATCCAGAAGGAATCCACCCTCCA 8956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433167378039410