Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq49 535 8e-147 seq277 122 2e-22 seq56 109 1e-18 SEQ20558 93.3 8e-14 SEQ20323 93.3 8e-14 >seq49 Length=1117640 Score = 535 bits (592), Expect = 8e-147 Identities = 991/1438 (69%), Gaps = 46/1438 (3%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || ||||| |||| |||||| | ||| | ||||||||||| || | |||| Sbjct 732497 GATCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGTTCCACAGTCCT---CTCTCC 732441 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || | | || ||| || ||| || | |||||||||||||||||| || | ||| Sbjct 732440 GTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCCGACAGAACCCTGCGG 732381 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || | |||||| ||| |||||||||| ||||| || ||| Sbjct 732380 GTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 732321 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || ||||| || | || |||||| |||||||||||||| || | ||| Sbjct 732320 GAGGCTGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATTTTC 732261 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 | ||| ||||||||||| | || |||| || || |||||||| Sbjct 732260 TCCTTCAGCAGCTTCCAGTCCCAGA-----GATCGGTCGGCGTCTTCT----CCCACATG 732210 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || ||||||| | ||||||||||| ||| ||||||||| ||| |||||| ||| | Sbjct 732209 TCGTACTGCAGGATGCCCTTGCTGACCGGGGAGCCCTCGTACGTCTCGTAGGGGCCGA-G 732151 Query 244367 CGCTGG-GCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATC-- 244423 | | | ||||||| |||||| | || || ||||||||||| ||||| |||||||| Sbjct 732150 CTCGGCCGCCAGCTCGCAGCTCGCCTCCAGAGCGGCGTAGTAAATGGTTTCGAAGATGTG 732091 Query 244424 -ATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGAC 244482 || ||| || | | |||| || || ||| | ||| | |||||| | Sbjct 732090 GATGTTGAGCAGTT---GAGCCTCTGGGCTTTCAAACGGGTGACGCATGAGAATGAAGGC 732034 Query 244483 GTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGC 244542 |||||| | ||||| || ||||| ||||| || ||||| |||||||| ||| | ||| Sbjct 732033 GTCGGCTAAACCCTGGACTCCGATTCCGATCGGCCTGTGGCGCTTGTTCGAGTTCTCGGC 731974 Query 244543 TTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TGC 244601 ||| || || ||||| ||||| ||||| | |||||| ||||| | ||| | | Sbjct 731973 TTCCGGTACCGGGTAGTAGTTGATCTCGATAATCTTGTTCAGGTTTTTGACGATTACTTT 731914 Query 244602 GGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCC 244661 || | || | ||||| || ||| || | || || || ||| | Sbjct 731913 GGTC-ACATATGCCAGTTTCTTAAAATCAAA-----AG------TCCGCTCTGGGG---- 731870 Query 244662 TCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGG 244721 | || || ||||||||||| | ||||||||| ||||| || ||||| ||| | ||| Sbjct 731869 TGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAGACCGCTACCTCGTCCTTGCTGG 731810 Query 244722 TGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGAT 244781 |||| | ||||| |||||||| ||||| |||||||| ||||||||||| | ||| || | Sbjct 731809 TGTATTCAACAATTTCGGTGCACAGGTTGCTGCACTTTATGGTGCCCAGATTCTGCTGGT 731750 Query 244782 TGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGG 244841 || ||| |||||||||||| ||||| |||||| | ||| || ||||| ||| | Sbjct 731749 TGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTTCCAGTCTCTGTCTGCG 731690 Query 244842 CGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTG 244901 | | || | || ||| || | | |||||| ||| | ||||||||||| Sbjct 731689 ACTCAATGATGGCGTACCACAGCTGCTGAGCCTTCACCACACGCTTGGCCTTGCCCTCCT 731630 Query 244902 CCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGC 244961 ||| || | |||||| || ||| ||||| |||||| ||| || || || |||| Sbjct 731629 TCTCATACCTGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCATCCAGACCAGGGC 731570 Query 244962 ACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGG 245020 | | || ||| ||||| ||| ||| || | | || || |||| |||||| || Sbjct 731569 AGG-CGTTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGA 731511 Query 245021 TCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTC 245080 || |||||||| | ||| | ||| ||||| |||| ||||||||| ||| || |||||| Sbjct 731510 TCAGGGATCCACATGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTC 731451 Query 245081 TTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGG 245140 ||| ||||||||| ||||| || ||||| | |||||||||||| | ||| | |||| | Sbjct 731450 TTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAGGGCTCTAGGTACATGGCGAAG 731391 Query 245141 GCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCG 245199 || ||||| | ||||||||| |||||||| || | | | || | |||| | | | Sbjct 731390 GCTCCGGGTCTCTTGTTGCCCCCCTGGTCGACGTAGCGTGCCGTG-TTGTTGTAAACTCT 731332 Query 245200 CAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCT-TGC 245258 ||| | || || | ||||| |||| ||||||||||| |||||| || |||| | Sbjct 731331 CAGCATGGGGACGAGCCCGTTGGAGTTTCCGTTGGTGCCAGAGATGTA-GCTCCCTGTAG 731273 Query 245259 CCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGC 245318 |||| | ||||| | || || | || || || ||||||||||||||| || Sbjct 731272 ATCTGATGCAGCTGACCGCCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGCACACT 731213 Query 245319 TCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGG 245378 ||| | ||||| ||||| || |||||||| ||||||| |||||| |||||| Sbjct 731212 GCTTCAGCGTGTCGTAGATGCCTTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGC 731153 Query 245379 AGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 ||||||||| ||| || | | | | |||||| ||||| ||| ||||||||| || Sbjct 731152 TGGACAGCTGAGGCCTGTTGGTCCCAGCGTTGAAGAGAGTCGGGGAGGCGTGGGTGAA 731095 >seq277 Length=566994 Score = 122 bits (134), Expect = 2e-22 Identities = 107/131 (82%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || ||||| | ||||| ||||| ||||||||||| || ||||||| ||||||||||| Sbjct 257269 GTGGCCTTCGCTGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGG 257328 Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 || ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| || Sbjct 257329 CTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGA 257387 Query 42827 CGAGGGGCTGC 42837 ||||| || || Sbjct 257388 CGAGGTGCCGC 257398 Score = 122 bits (134), Expect = 2e-22 Identities = 107/131 (82%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || ||||| | ||||| ||||| ||||||||||| || ||||||| ||||||||||| Sbjct 272327 GTGGCCTTCGCTGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGG 272268 Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 || ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| || Sbjct 272267 CTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGA 272209 Query 42827 CGAGGGGCTGC 42837 ||||| || || Sbjct 272208 CGAGGTGCCGC 272198 Score = 93.3 bits (102), Expect = 8e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 270463 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 270404 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 270403 GGTGGGCGAGTACCAG 270388 >seq56 Length=1093683 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || ||||| | ||| ||||| ||||||| || | ||| ||| Sbjct 334794 ACCTGAAACTCTCCTGAGAGCACCCTGCGTGTGTAGATGTTGCTGGTGTAAGCCTCAATG 334853 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || || || || |||||||| | || |||||| Sbjct 334854 GACTCATTGTTGCCCAGGATCTGAGCAGTAGAAGCTGTGGGCATGGGGGCCAAAAGCAGA 334913 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| |||||||| Sbjct 334914 CTGTTCCTCACACCGTGCCT 334933 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | ||||||| | || ||||| ||||| ||||| || | |||||||| Sbjct 335775 CACCTCGTCTTTGCTGGTGTATTCTACGATCTCTGTGCACAGGTTGCTAGATTTGATGGT 335834 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 |||||| | || || ||| ||| |||||||||||||||||| |||||| | || Sbjct 335835 GCCCAGATTTTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTACAGCATGTACGGTGT 335894 Query 244825 CCCGGTCTC 244833 |||||| || Sbjct 335895 CCCGGTTTC 335903 >SEQ20558 Length=1072 Score = 93.3 bits (102), Expect = 8e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 325 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 266 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 265 GGTGGGCGAGTACCAG 250 >SEQ20323 Length=1115 Score = 93.3 bits (102), Expect = 8e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 368 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 309 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 308 GGTGGGCGAGTACCAG 293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943980185844640