Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1673 122 9e-23 SEQ16359 120 3e-22 seq365 98.7 1e-15 seq3796 93.3 5e-14 seq510 91.5 2e-13 seq744 89.7 6e-13 seq993 86.0 7e-12 seq915 84.2 2e-11 seq2115 82.4 8e-11 >seq1673 Length=142529 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||||| ||||| || | ||| |||||| || || ||||| |||| | Sbjct 266 CCTCCACGGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 207 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||||||||| || || || | ||||||||| | || Sbjct 206 AGGGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 147 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || || ||||| ||| ||| ||| | || | | |||||||| | ||||| Sbjct 146 ATGCCTTCTTTGTCTTGGATCTTTGCTTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 87 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || || ||||| |||||||| ||||| Sbjct 86 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 40 >SEQ16359 Length=2539 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41986 CTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAG 42045 |||| | ||||| ||||| || | ||| |||||| || || ||||| || | || | Sbjct 2539 CTCTCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGG 2480 Query 42046 TCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGC 42105 | || | || ||||||||||||||||| || || || || |||||||| | || | || Sbjct 2479 TGCGACCATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGCTGGTCAGGAGGGATGC 2420 Query 42106 TCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGA 42165 || |||||| ||| ||| ||| | || | | |||||||| | ||||| || | Sbjct 2419 CTTCTTTGTCCTGGATCTTTGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCA 2360 Query 42166 CCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 ||||| ||||| || || || ||||| |||||||| ||||| || || Sbjct 2359 GGGTGATTGTTTTACCAGTCAGGGTCTTCACAAAGATCTGCATCTTGAC 2311 >seq365 Length=500478 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||| || ||||| |||| || || || | || || |||||||| |||||||| Sbjct 4130 TCTTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCGAAG 4189 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | | ||||||||| | || | || ||||||||| ||| || ||| | || Sbjct 4190 ATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTC 4249 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| || | || || |||| ||||||||||| || || || ||||| || Sbjct 4250 TCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTTTTACCAGTGAGTGTCTTGACG 4309 Query 42198 AAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 4310 AAGATCTGCATGTT 4323 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| |||| || || || |||| || |||||||| |||||||| Sbjct 8968 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 9027 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | | |||||| || | || | || || |||||| ||| || ||| | || Sbjct 9028 ATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCTTTCACGTTC 9087 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| || | || || || | ||||||||||| || || || ||||| || Sbjct 9088 TCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTACCAGTGAGTGTCTTGACG 9147 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 9148 AAGATCTGCAT 9158 >seq3796 Length=36161 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 28251 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 28192 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 28191 TATACTAACGAGGA 28178 >seq510 Length=807390 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||||||||| || || || || |||||||| | || | || || |||||| | Sbjct 1575 AGCTGCTTACCAGCAAAGATCAGACGTTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGG 1634 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || ||| ||| | || | | |||||||| | ||||| || | ||||| ||||| Sbjct 1635 ATCTTTGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATTGTTTTA 1694 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || || || ||||| |||||||| ||||| || || Sbjct 1695 CCAGTCAGGGTCTTCACAAAGATCTGCATCTTGAC 1729 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||||||||| || || || || |||||||| | || | || || |||||| | Sbjct 4235 AGCTGCTTACCAGCAAAGATCAGACGTTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGG 4294 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || ||| ||| | || | | |||||||| | ||||| || | ||||| ||||| Sbjct 4295 ATCTTTGCTTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATTGTTTTA 4354 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || || || ||||| |||||||| ||||| || || Sbjct 4355 CCAGTCAGGGTCTTCACAAAGATCTGCATCTTGAC 4389 >seq744 Length=314959 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 249949 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 249890 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 249889 TACTAACGAGGA 249878 >seq993 Length=254094 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 147964 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 147905 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 147904 TACTAACGAGGA 147893 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 158411 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 158352 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 158351 TACTAACGAGGA 158340 >seq915 Length=266871 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 56998 AAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||| ||||| |||| || | | |||||||||| ||||| |||||||||||||||| || Sbjct 78371 AAATATTTTTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGAT 78312 Query 57056 ACTCACCACTATACTACCGAGGA 57078 ||| ||||||||||| |||||| Sbjct 78311 ACTGTCCACTATACTAACGAGGA 78289 >seq2115 Length=101419 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 57001 AATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 57060 || || |||| || | | |||||||||| ||||| |||||||||||||||| ||||| Sbjct 21477 AAATTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGT 21418 Query 57061 CCACTATACTACCGAGGA 57078 ||||||||||| |||||| Sbjct 21417 CCACTATACTAACGAGGA 21400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543006284073760