Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1029 122 1e-22 seq797 116 5e-21 seq335 105 1e-17 >seq1029 Length=384109 Score = 122 bits (134), Expect = 1e-22 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || | ||||| || || ||| || |||||||||||||||||||||||| | Sbjct 197591 GCGGTGTTGATGATGTTGAAGCCCACGGTGCCTCCGAAGGTGCTGGGTTTCCAGTACTCT 197650 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 || ||||||||| |||| |||| | || || | || || || ||||||| ||| | Sbjct 197651 GGAGAGCAGATGGCGTTTCCCATTAAGCCCTTGAGAGAGAAAGGGGCCCCCATCTCCACC 197710 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || |||| || |||||||| || | ||||| || || | ||||| | |||||| Sbjct 197711 ATTGTCTCTCCAAAGATGGCGTTGGCCCTGGGTTTCTCCACCAGCAAGCCCGGGTAGAGC 197770 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | || |||| || ||| || || | |||| | | || || || || || |||||| Sbjct 197771 TCCATGGCGTCGATGTGGCCGTACAGCTCCTCCAGCACTGCCGCCATTTCTTTGTCACCT 197830 Score = 93.3 bits (102), Expect = 6e-14 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 9500 TGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCA 9559 ||||| | || || |||| ||| | || | | || | ||| | ||| || |||| Sbjct 198770 TGTTGAAGACAAACTGTTTGTAGCTGTAATCTGTCTCCTCAATGTGGAAACTGTCGGGCA 198829 Query 9560 ACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAA 9619 ||| | |||||| |||| ||||| || ||||| | || || |||||||||||||| | Sbjct 198830 TCAGTGGGTGCCAGTGGTACAGGGTGTTAAACTCAGATGCAATGCGGTTCTGGTACTGGA 198889 Query 9620 AG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAG 9677 || || ||| ||| || ||||| |||||||| | |||| |||||| || || || || Sbjct 198890 AGCGCTGGT--TGAAGAGCAACTCGGGGTCAAACTTGAGCTTGAAGTGATAGCCACTCAG 198947 Query 9678 TTGCTGGACATA 9689 ||||| ||||| Sbjct 198948 GTGCTGCACATA 198959 >seq797 Length=296498 Score = 116 bits (128), Expect = 5e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 8938 GGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGG 8997 |||||| ||||||| || || || || |||||||||||||| ||||||||| | || Sbjct 254805 GGTTTTGACGATGTTAAAGCCCGTCTCTCCTCCGAAGGTGCTGGGCTTCCAGTACTCAGG 254864 Query 8998 GGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGAT 9057 |||||||||| ||| ||| || ||||||| ||| || ||||| |||| ||| | || Sbjct 254865 GGAGCAGATGGGGTTTCCCAGAAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCCACCAT 254924 Query 9058 GCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTC 9117 ||||||||| || ||| ||||| | ||| || | | || ||| | ||| | || Sbjct 254925 GCTCTCACCAAATATGCTGTTAGGACGAGCTTTCTCCAGCAGGACGCCGGGGTAAAACTC 254984 Query 9118 GACAGCCTCGACGTCGCCATAGAG 9141 | ||| || | ||| || ||||| Sbjct 254985 CAGAGCATCTATGTCTCCGTAGAG 255008 Score = 89.7 bits (98), Expect = 7e-13 Identities = 155/224 (69%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 ||||| || || | |||||| ||| |||| || |||||| || || | || ||| Sbjct 259254 GTGGTCTGGAAAAGCTGCTCATCATCCCAGCTGGGATGTTCGACCTTCAGGATGTCACAG 259313 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || |||||||| || ||||||||||||||||||||||| | | ||||||| | ||| Sbjct 259314 ACTCTGTTGTGCTCCCTCAGCCATATGGTGGCGTACATGGTGAGGCCCGGCAGGAGGCCA 259373 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCA---CTTCGGGCGCATACAGC 9912 ||||| || | || | || | |||| | ||| | || | |||| || || | | Sbjct 259374 AACACCTCCTGACCGATGGCCAGGCGCTGCTCAGCTGGGAAGCCTTCAGG---GTAAACC 259430 Query 9913 ATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACC 9956 || ||||| || ||| || || || || ||||| ||||| Sbjct 259431 ATGTGCACAGGGACCTCAGATACCGTAGGTGGGTACATCTCACC 259474 >seq335 Length=518472 Score = 105 bits (116), Expect = 1e-17 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 || || ||||| || || || | || || ||||||||||| |||||||| | || || Sbjct 120188 TTTACTATGTCAAAGCCGACTTTGCCTCCAAAGGTGCTGGGCTTCCAGTAATCTGGAGAA 120129 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 || || ||| ||| ||| ||||| | ||| || || || |||| ||| | ||||| Sbjct 120128 CATATAGGGTTTCCCAGGAGGCCTTTGAGGGAGAAGGGGGCGCCCATCTCCACCATGCTT 120069 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 || || || ||||| || || || | ||| || | || ||||||| || | ||| ||| Sbjct 120068 TCTCCAAATATGGCCCCCGGTCGTGTTTTCTCCAACATCAAGCCAGGATAAAATTCAACA 120009 Query 9122 GCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCT 9167 || |||| ||||||||| |||| | | | |||||||||| Sbjct 120008 GCGTCGATATCGCCATAGTACTCTTCAAGCGTGCGGGCTATCTCCT 119963 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 9715 TCCCCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGT 9774 || ||| | ||||| || || |||||||| || | |||||||||| |||| || || Sbjct 115895 TCACCGATGATGATGAGCCGTGTGGTTTGGAAAAGCTGCTCGTCATCCCAGGTGGGATGC 115836 Query 9775 TCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATC 9834 || || || | || ||||| | |||||| || |||||||| | |||||||||||| Sbjct 115835 TCTGCCTTCAGGATGTCACAGACTCGGTTGTGCTCCCTCAGCCACAGGGTGGCGTACATT 115776 Query 9835 ATTAAACCCGGCACTAAACCAAACACTTCATTCCC 9869 |||||| || | | ||||||||||| | ||| Sbjct 115775 CCTAAACCAGGAAGAAGTCCAAACACTTCCTGCCC 115741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723452856707600