Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq49 145 9e-30 seq277 91.5 2e-13 seq56 86.0 8e-12 seq4 82.4 9e-11 >seq49 Length=1117640 Score = 145 bits (160), Expect = 9e-30 Identities = 522/800 (65%), Gaps = 16/800 (2%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | || | | |||| ||||| |||| ||| ||||| |||||| Sbjct 732377 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 732318 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 ||||||||||| || |||| || |||||||| | | || || ||| Sbjct 732317 GCTGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATTTTCTCC 732258 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGC-TTTGTCTCCCCCTCCCACATATCAAACTGGAG 116081 || || | |||||| || || | | | | | ||||||||| || |||| || Sbjct 732257 TTCAGCAGCTTCCAGTCCCAG-AGATCGGTCGGCGTCTTCTCCCACATGTCGTACTGCAG 732199 Query 116082 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAA 116141 ||| || | | | || || ||||| | ||||| || ||||| | |||||| Sbjct 732198 GATGCCCTTGCTGACCGGGGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCGGCCGCCAG 732139 Query 116142 TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGC 116201 ||| |||||||||| || || |||| || || || || || ||| | || | || Sbjct 732138 CTCGCAGCTCGCCTCCAGAGCGGCGTAGTAAATGGTTTCGAAGATGTGGATGTTGA--GC 732081 Query 116202 -CTTG-GCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCT 116259 ||| ||||| | ||||||| | |||| | ||| || | || || | ||| Sbjct 732080 AGTTGAGCCTCTGGGCTTTCAAACGGGTGACGCATGAGAATGAAGGCGTCGGCTAAACCC 732021 Query 116260 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTCCACGGG 116318 ||||| |||| || || || | || | | | || || || ||| || | || || Sbjct 732020 TGGACTCCGATTCCGATCGGCCTGTGGCGCTTGTTCGAGTTCTCG-GCTTCCGGTACCGG 731962 Query 116319 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 116378 || | || | ||||||| | | || || |||||| || || || || | | ||| Sbjct 731961 GTAGTAGTTGATCTCGATAATCTTGTTCAGGTTTTTGACGATTACTTTGGTCACAT-ATG 731903 Query 116379 -AAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 116437 || || | |||||||| | || |||| |||| ||| | |||||||| | Sbjct 731902 CCAGTTTCTTAAAATCAAAAGTCCG---CTCTGGGGTGACGTACATGTTGAGGGCGATGG 731846 Query 116438 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACA 116497 | ||||| ||||| || | ||| ||||| ||||| || | |||||| || |||| Sbjct 731845 AGGCCAGGTTACAGACCGCTACCTCGTCCTTGCTGGTGTATTCAACAATTTCGGTGCACA 731786 Query 116498 AATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 116557 || | ||| |||||||||| |||| || || ||| |||| || || || | Sbjct 731785 GGTTGCTGCACTTTATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTT 731726 Query 116558 TGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CA 116616 |||| ||||| |||||||| || ||||| || || |||| | || || | ||| | | Sbjct 731725 TGTACAGCATGTATGGCGTTCCAGTCTCTGTCTGCGACTCAATGATGGCGTACCACAGCT 731666 Query 116617 TCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCC 116676 | | | || || || ||||| ||||||| ||| ||| | |||||||| | Sbjct 731665 GCTGAGCCTTCACCACACGC-TTGGCCTTGCCCTCCTTCTCATACCTGGTGTAGAGCTTC 731607 Query 116677 TCAAACTCTTCACCCACAGC 116696 |||||||| || ||| |||| Sbjct 731606 TCAAACTCCTC-CCCCCAGC 731588 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 117027 CATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGAT 117086 || ||| || || || || |||| ||||| | || |||| | | || || ||||||| Sbjct 731253 CACACCGATGCCTCCAGCTGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAGAT 731194 Query 117087 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGG 117146 || || || ||| |||| | |||| ||||||||||| |||| || ||||| Sbjct 731193 GCCTTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTT 731134 Query 117147 TGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 || |||||||||||||| || || | |||||| ||||| Sbjct 731133 GGTCCCAGCGTTGAAGAGAGTCGGGGAGGCGTGGGTGAAC 731094 >seq277 Length=566994 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 257392 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 257333 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || ||| || || |||||||||||||| |||||||| ||||| | Sbjct 257332 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGG 257273 Query 127659 CAAATAGACGCTC 127671 | | | |||||| Sbjct 257272 CCACAACACGCTC 257260 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 272204 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 272263 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || ||| || || |||||||||||||| |||||||| ||||| | Sbjct 272264 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGG 272323 Query 127659 CAAATAGACGCTC 127671 | | | |||||| Sbjct 272324 CCACAACACGCTC 272336 >seq56 Length=1093683 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||||| | |||||||||| |||| ||| || || || || Sbjct 334827 TAGATGTTGCTGGTGTAAGCCTCAATGGACTCATTGTTGCCCAGGATCTGAGCAGTAGAA 334886 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||||||||||| |||| || || ||||| Sbjct 334887 GCTGTGGGCATGGGGGCCAAAAGCAGACTGTT 334918 >seq4 Length=2013838 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 127553 ATGAGTTCATTCGAG-AAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 127611 || |||||||| ||| ||| | ||||| ||||| | || | |||||| ||||| | || Sbjct 553665 ATCAGTTCATTGGAGTAAGTA-AGACCAGGCATCAAGCCTCTCTTCTTTAACCAATAGAT 553607 Query 127612 CGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 ||| ||||||||||||||||||||| ||||||||| Sbjct 553606 GGCAGCAAATGAGCCAGAGAAGAAGATGCCCTCCACA 553570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613273959900240