Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1673 141 2e-28 seq365 127 5e-24 >seq1673 Length=142529 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| || |||||||| |||| ||||||||||| || || Sbjct 260 CGGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 201 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || || ||||| || | ||||||||| ||| || ||| Sbjct 200 CGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCT 141 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || |||||| ||||| || | |||||| | | || || |||| Sbjct 140 TCTTTGTCTTGGATCTTTGCTTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGG 81 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || |||||||| || || Sbjct 80 GTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTG 43 >seq365 Length=500478 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||||||||| || || ||||| |||| ||||||||||| | || | ||||| Sbjct 3821 CAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 3880 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| | | ||||||||| || ||| || || || Sbjct 3881 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTC 3940 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || |||| |||||| | | || || |||| ||||| || Sbjct 3941 CTGGATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 4000 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| ||||| || || ||||| || || Sbjct 4001 CTTACCAGTGAGTGTCTTGACAAAGATCTG 4030 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||||||||| || || ||||| |||| ||||||||||| | || | || || Sbjct 8946 CAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTC 9005 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || |||||||| | | |||||| || || ||| |||||| || Sbjct 9006 CTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTC 9065 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| |||| |||||| | | || || |||| ||||| || Sbjct 9066 CTGGATCTTAGCTTTCACGTTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 9125 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || || Sbjct 9126 TTTACCAGTGAGTGTCTTGACGAAGATCTG 9155 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || || || ||||||| ||||||||||| | || | ||||||||||||||| Sbjct 4118 TGGAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 4177 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||| |||||||| | | ||||||||| ||| ||| ||||| ||||| ||||| Sbjct 4178 TTTCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTG 4237 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||| || | |||||| | | || || || | ||||| || ||||| ||| Sbjct 4238 GCTTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTTTTACCAGTG 4297 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || || || || || || || Sbjct 4298 AGTGTCTTGACGAAGATCTG 4317 Score = 107 bits (118), Expect = 5e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||||||||| || || ||||| |||| ||||||||||| | || | || || Sbjct 9174 CAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTC 9233 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| | | ||||||||| || ||| |||||| || Sbjct 9234 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 9293 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||| ||||| ||| || |||| |||||| | | || || |||| ||||| Sbjct 9294 CTGGATCTTAGCCTTGACATTCTCGATGGTGTCGCTGGGCTCAACCTCCAGGGTGAT 9350 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||||||||||||||| || |||||||| | | ||||||||| || ||| |||||| Sbjct 9655 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCT 9714 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| || || ||| || || | |||||| | | || || || | ||| Sbjct 9715 TTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTG 9774 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || ||||||||||| || || Sbjct 9775 ATGGTCTTGCCAGTAAGGGTTTTCACAAAGATCTG 9809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178462198567738