Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq365 149 6e-31 SEQ16359 129 6e-25 seq1673 129 6e-25 seq277 93.3 4e-14 >seq365 Length=500478 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || |||||||||||| | || || ||| ||| Sbjct 9158 ATGCAGATCTTCGTCAAGACACTCACTGGTAAAACCATCACCCTGGAGGTTGAGCCCAGT 9099 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| |||||||| || |||||| | || || Sbjct 9098 GACACCATCGAGAACG-TGAAAGCTAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCA 9040 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| ||||| |||||||| |||| ||||||||| |||||||| Sbjct 9039 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCTGACTACAA 8980 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| |||||| | || || || | || |||||| |||| || ||| Sbjct 8979 CATCCAGAAGGAATCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGGC 8931 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || ||||||||| | || || ||| ||| Sbjct 4033 ATGCAGATCTTTGTCAAGACACTCACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 3974 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 3973 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 3914 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 3913 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 3854 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || || | ||||||||| |||| || || Sbjct 3853 ATCCAGAAGGAATCCACCCTCCACCTTGTGCTGCGTCTGAGGGGTGG 3807 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38237 TaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 38296 || ||| ||||| || ||||| || || ||||| || |||||||||||| |||| || || Sbjct 4327 TACAAACATGCAGATCTTCGTCAAGACACTCACTGGTAAAACCATCACCCTCGAGGTTGA 4268 Query 38297 GGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | ||| |||| | | | | | |||| || |||| ||||| || || ||||| | Sbjct 4267 GCCCAGTGACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCC 4208 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 ||||| ||| || | || | ||| || || |||||||| || | ||||||||| || Sbjct 4207 TGACCAGCAGAGGTTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTCTCTGA 4148 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||||||||||||| ||| | || || || Sbjct 4147 CTACAACATCCAAAAAGAATCCACCCTCCA 4118 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 38278 CCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCG 38337 |||||||| | || || ||| ||| ||||| | | | | | || | || |||| | Sbjct 9352 CCATCACCCTGGAGGTTGAGCCCAGCGACACCATCGAGAATGTCAAGGCTAAGATCCAGG 9293 Query 38338 ACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACG 38397 ||||||| || |||||| | ||||| ||| || | || | || ||||| |||||||| | Sbjct 9292 ACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAG 9233 Query 38398 ACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGC 38457 ||| ||||||||| |||||||||||||| |||||| | || || || | || |||| Sbjct 9232 ACGGCCGCACCCTCTCTGACTACAACATCCAGAAGGAATCCACCCTCCACCTTGTCCTGC 9173 Query 38458 GTTTGAGAGGCGGC 38471 || |||| || ||| Sbjct 9172 GTCTGAGGGGTGGC 9159 >SEQ16359 Length=2539 Score = 129 bits (142), Expect = 6e-25 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || || ||||| |||||| | || || ||| || Sbjct 2314 AAGATGCAGATCTTTGTGAAGACCCTGACTGGTAAAACAATCACCCTGGAGGTGGAGCCC 2373 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | ||||| | | | | | |||| ||| |||| |||||||| || || || | ||| Sbjct 2374 AGCGACACCATCGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCTCCTGAC 2433 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || || || | || || || ||||| || || | ||||||||| ||||||| Sbjct 2434 CAGCAACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACCCTCTCCGACTAC 2493 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAG 38466 |||||||| ||||| | || || || ||||||||||| |||||| Sbjct 2494 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTGAGAG 2539 >seq1673 Length=142529 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| ||||||||| | || || ||| ||| | Sbjct 40 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 99 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| ||| |||| |||||||| || || || | ||||| Sbjct 100 GACACCATTGAGAATGTGAAAGCAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAG 159 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || |||||||| || | |||||||| ||||||||| Sbjct 160 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 219 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || || || ||||||||||| Sbjct 220 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGT 255 >seq277 Length=566994 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 |||||||| |||||||||||||| |||||||||||||| || |||| |||||| |||| Sbjct 256815 ACCAGATTCTCGTTGACGATGCCATCGCTGGCGGCGAAGAAAGCCAACACGTGTGAGATG 256756 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | ||| | || |||| |||||||| || ||| |||||||| |||||| Sbjct 256755 AAGTACTTCTCTTCTTCCTTCAGAGTCTCCCAGTGCTGCAGGTCTTTGGACAGATCCACC 256696 Query 133399 T 133399 | Sbjct 256695 T 256695 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||| ||| ||||| || ||||| | ||||||||||||||| || || Sbjct 256979 GTAGGTGTCGATCAGGAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAA 256920 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 || || || || || ||||| |||||||||||| || | ||||||||| ||| Sbjct 256919 ACCATAGAAACAGCGGGCCTCCGTCACCTGCACTTCCTGTGTGAAACGCTCCACC 256865 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||| ||| ||||| || ||||| | ||||||||||||||| || || Sbjct 272617 GTAGGTGTCGATCAGGAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAA 272676 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 || || || || || ||||| |||||||||||| || | ||||||||| ||| Sbjct 272677 ACCATAGAAACAGCGGGCCTCCGTCACCTGCACTTCCTGTGTGAAACGCTCCACC 272731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499982646805760