Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq49 201 1e-46 seq4 86.0 7e-12 >seq49 Length=1117640 Score = 201 bits (222), Expect = 1e-46 Identities = 913/1417 (64%), Gaps = 78/1417 (6%) Strand=Plus/Minus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || ||| | | || || |||| ||||| |||||| Sbjct 732471 CTTCATCTCCTCGTTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGAC 732412 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| ||||||||||| || || | |||||||| | ||||||| ||| | Sbjct 732411 GATCTGAAACTCTCCCGACAGAACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGAT 732352 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || |||||||||||||| ||||| || |||| || || Sbjct 732351 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAG 732292 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAG 106080 ||||| | | || | || ||| ||||| || | | |||||| || || Sbjct 732291 GCTGTTCCTCACGCCATGTTTGGCGATTTTCTCCTTCAGCAGCTTCCAGTCCCAGA-GAT 732233 Query 106081 C--TTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAAC 106136 | | || || || ||||||| || | || || | |||||| ||| ||||| | Sbjct 732232 CGGTCGGCGTCTTCT-CCCACATGTCGTACTGCAGGATGCCCTTGCTGACCGGGGAG--C 732176 Query 106137 CCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 106196 |||| | ||||| |||| || | | | |||| || |||||||||||||| | | Sbjct 732175 CCTCGTACGTCTCGTAGGGGCCGAGCTCGGCCGCCAGCTCGCAGCTCGCCTCCAGAGCGG 732116 Query 106197 CGTGATACATGGTTTCAAAGATACG-------AGCA-TTCATCTCCTTGGCTTCATCTGA 106248 ||| || |||||||| ||||| | |||| || | | || ||||| Sbjct 732115 CGTAGTAAATGGTTTCGAAGATGTGGATGTTGAGCAGTTGAGCCTCTGGGCTT------- 732063 Query 106249 ATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAAT 106308 ||||| | || || | ||| || | || || | ||| || || || | || || Sbjct 732062 -TCAAACGGGTGACGCATGAGAATGAAGGCGTCGGCTAAACCCTGGACTCCGATTCCGAT 732004 Query 106309 AGGTCTGTGTCGCATATTAGACTT-TCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAA 106367 || ||||| ||| | || || || ||| || | || || || | || | || | Sbjct 732003 CGGCCTGTGGCGCTTGTTCGAGTTCTCG-GCTTCCGGTACCGGGTAGTAGTTGATCTCGA 731945 Query 106368 TGACTCGGTTTAGATTTTTGGTAACAAT--CTTTG-TGATTTCATGA-AGTTTTTCATAA 106423 | | ||| || |||||| || || ||||| | | | ||| ||||| | | || Sbjct 731944 TAATCTTGTTCAGGTTTTTG---ACGATTACTTTGGTCACAT-ATGCCAGTTTCTTAAAA 731889 Query 106424 TCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAA 106483 |||||||| || |||| |||| ||| | |||||||| || |||| || || Sbjct 731888 TCAAAAGTCCG---CTCTGGGGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTACAG 731832 Query 106484 ACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTA 106543 || || ||| ||||| ||||| || | |||||| || |||| |||| | ||| Sbjct 731831 ACCGCTACCTCGTCCTTGCTGGTGTATTCAACAATTTCGGTGCACAGGTTGCTGCACTTT 731772 Query 106544 ATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAG 106603 || || |||| ||||| ||||| ||||| ||||||| || || ||||| |||||||| Sbjct 731771 ATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTAT 731712 Query 106604 GGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTAC 106662 ||||| || ||||| ||||| |||| | || || | ||||| | | | | || | Sbjct 731711 GGCGTTCCAGTCTCTGTCTGCGACTCAATGATGGCGTACCACAGCTGCTGAGCCTTCACC 731652 Query 106663 AATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACC 106722 | || |||||| |||||| ||| ||| | |||||||| ||||||||||| || Sbjct 731651 ACACGC-TTGGCCTTGCCCTCCTTCTCATACCTGGTGTAGAGCTTCTCAAACTCCTC-CC 731594 Query 106723 CACCGC-GTCGGAGAGACCTGG---TGCCTTGTCTGGACAGAAAAGAGACCATTGACCAC 106778 | | || || ||||| || || ||| ||||| | |||||||| | || Sbjct 731593 CCCAGCACTCATCCAGACCAGGGCAGGCGTTG---GGACACATCAGAGACCA--GTCCTG 731539 Query 106779 CCT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT 106836 | ||| || | ||||||||| || || || ||||||| || | || || ||||| Sbjct 731538 GTTGCTCTCCACTCTCTTCATGAACAGATCAGGGATCCACATGGCGTAGAAAAGGTCTCT 731479 Query 106837 ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCG 106895 || ||| || | ||| ||| || | | ||| ||||| || | | || Sbjct 731478 GGCCCTCTGCTCCTCCTTTCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCGAACACGTCAA 731420 Query 106896 CGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTT 106951 |||||| ||||| || || | |||| | ||| || | | |||| | || | Sbjct 731419 AGTGCCAGGGCTCTAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCC-CCCTGGTCG 731361 Query 106952 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 107011 || ||||| || ||| ||| | || | ||||| || | | || | || | || Sbjct 731360 ACGTAGCGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGAGCCCGTTGGAGTTTCCG 731301 Query 107012 TTTGTCCCCCGAATACGAGATTTATTGGCTCTC---ACATC--ATGGATGTG-----CAT 107061 || || || ||||| || |||| | | ||| ||| | || || Sbjct 731300 TTGGTGCC-------AGAGATGTA---GCTCCCTGTAGATCTGATGCAGCTGACCGCCAC 731251 Query 107062 CCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACC 107121 || || || ||||| |||| ||||| | ||||||| | | || || | ||||| || Sbjct 731250 ACCGATGCCTCCAGCTGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAGATGCC 731191 Query 107122 GTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGT 107181 | || ||| ||||| |||||| |||||||| ||||||| ||| || || || Sbjct 731190 TTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGT 731131 Query 107182 ACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 ||||| |||||||| || || | ||||| ||||| Sbjct 731130 CCCAGCGTTGAAGAGAGTCGGGGAGGCGTGGGTGAAC 731094 >seq4 Length=2013838 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/135 (76%), Gaps = 4/135 (3%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAG-AAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||||| | | ||| |||||||| ||| ||| | || || ||||| | || | |||| Sbjct 553679 CCTCATCCCTGCTAATCAGTTCATTGGAGTAAGTA-AGACCAGGCATCAAGCCTCTCTTC 553621 Query 117352 TTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 117410 || |||||||| || || ||| ||||| || ||||||||||| ||||||||| ||||| Sbjct 553620 TTTAACCAATAGATGGCAGCA-AATGAGCCAGAGAAGAAGATGCCCTCCACAGCTGCAAA 553562 Query 117411 CGCAAAAAGGCGCTC 117425 || | || ||||| Sbjct 553561 AGCCACAATTCGCTC 553547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589756504049360