Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq365 114 8e-21 SEQ16359 102 5e-17 seq1673 102 5e-17 >seq365 Length=500478 Score = 114 bits (126), Expect = 8e-21 Identities = 147/201 (73%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| || ||||| ||||| || ||| | || |||| |||||||| ||||| || || Sbjct 4129 TTCTTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCGAA 4188 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | |||||||| | || | || |||||||| ||||| ||| || | Sbjct 4189 GATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCAC--A 4246 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || |||||| |||| ||| |||||||| || ||||| ||||| Sbjct 4247 TTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTTTTACCAGTGAGTGTCTTG 4306 Query 34968 ACAAAGATCTGCATATTCGTA 34988 || ||||||||||| || ||| Sbjct 4307 ACGAAGATCTGCATGTTTGTA 4327 Score = 111 bits (122), Expect = 1e-19 Identities = 171/242 (71%), Gaps = 9/242 (4%) Strand=Plus/Plus Query 34747 AATCATTT-----CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAAT 34801 |||||||| || ||||||| | || || | ||| | ||| ||| ||||| || Sbjct 3794 AATCATTTATTGACCACCCCTCAGACGCAGCACAAGGTGGAGGGTGGATTCCTTCTGGAT 3853 Query 34802 GTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTG 34861 ||| ||||| || ||| | || |||| |||||||| || || ||||| || | | || Sbjct 3854 GTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTG 3913 Query 34862 CTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGAT 34919 |||||| | || | ||||||||||| ||||| ||||| || || || | Sbjct 3914 CTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGAC--ATTCTCGATGGTG 3971 Query 34920 TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGC 34979 |||| || ||| || || | ||| ||||| || || ||||| ||||| |||||||||||| Sbjct 3972 TCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTGAGTGTCTTGACAAAGATCTGC 4031 Query 34980 AT 34981 || Sbjct 4032 AT 4033 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || || | ||| | ||| ||| ||||| ||||| ||||| || Sbjct 8932 CCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 8991 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||||||| || || || || || | | ||||| ||| | || Sbjct 8992 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCTGGGGGA 9051 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || ||||| ||||| ||| ||| | || | |||| || |||||| Sbjct 9052 ATGCCTTCTTTGTCCTGGATCTTAGCTTTCACGTTCTCGATGGTGTCACTGGGCTCAACC 9111 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| |||||||| || ||||| ||||| || ||||||||||| Sbjct 9112 TCCAGGGTGATGGTTTTACCAGTGAGTGTCTTGACGAAGATCTGCAT 9158 >SEQ16359 Length=2539 Score = 102 bits (112), Expect = 5e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| || Sbjct 2525 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCT 2466 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || ||||||||||| | || | || || ||||| Sbjct 2465 AGCTGCTTACCAGCAAAGATCAGACGTTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGG 2406 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||| || || || || | || | || ||| || || | ||| || |||| Sbjct 2405 ATCTTTGCTTTCAC--ATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATTGTTT 2348 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || || || |||||||||||||||||||| || Sbjct 2347 TACCAGTCAGGGTCTTCACAAAGATCTGCATCTT 2314 >seq1673 Length=142529 Score = 102 bits (112), Expect = 5e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 |||||||| | | | || |||| ||| | ||| || ||||| ||||| ||||| Sbjct 269 TTTCCTCCACGGAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 210 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || ||| | || |||| |||||||| || || ||||| || || | |||||||| | Sbjct 209 GACAGGGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGA 150 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCT 34929 || | || || ||||| ||||| ||| || || || || | || | || || Sbjct 149 GGGATGCCTTCTTTGTCTTGGATCTTTGCTTTCAC--ATTCTCAATGGTGTCGCTGGGCT 92 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | ||| ||||| || || ||||| |||||||||||||||||||| Sbjct 91 CCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 40 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324513267860592