Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 8e-16 seq13 93.3 3e-14 seq1607 89.7 4e-13 >seq4 Length=2013838 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || || ||| |||| || ||||||| |||||| ||||| ||||| || || || ||||| Sbjct 553544 GGTGAGCGAATTGTGGCTTTTGCAGCTGTGGAGGGCATCTTCTTCTCTGGCTCATTTGCT 553603 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 ||||| | |||||||||||| |||| ||||||||||| | || | || ||||| | Sbjct 553604 GCCATCTATTGGTTAAAGAAGAGAGGCTTGATGCCTGGTCTTACTTACTCCAATGAACTG 553663 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 553664 ATTAGCAGGGATGA 553677 >seq13 Length=1604512 Score = 93.3 bits (102), Expect = 3e-14 Identities = 79/96 (82%), Gaps = 6/96 (6%) Strand=Plus/Plus Query 77862 CTTCTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTG--- 77918 || |||||||||| |||||||||||| |||||| |||||||||||| || || || Sbjct 1541113 CTCCTCTGACAAAGGCCCAGGCATCTCGCTCTGATGCAAACTTCTTGAA---GGATGGAC 1541169 Query 77919 CTGGGAATTTGTCTACTTGGCTCTTACATTCATCCC 77954 ||| |||||||| || || |||||||||||||||| Sbjct 1541170 CTGAAAATTTGTCCACCTGTCTCTTACATTCATCCC 1541205 >seq1607 Length=150533 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 87073 TTTTATTGGTTCTTTATAGATTTTAGTATATGCAATATGCGCATAAAGAGATCGATAATA 87132 ||||| || ||||| || || | || | | ||| ||| ||| ||||| | || || Sbjct 129917 TTTTAGTGCTTCTTCATGGAGTCCAGGACACGCAGGATGTGCAGGAAGAGGTTGACGATG 129976 Query 87133 TCCATGTAAATGTGGATAAATGCTACAATGTATTCGTCAGGAGAAAACTGTTTCATTAGC 87192 || | ||| | || ||| | || | |||| || ||||| || | ||| ||||| ||| Sbjct 129977 TCAAGGTAGAGGTTGATGGAAGCCAAGATGTGCTCCTCAGGTGAGAGCTGCTTCATCAGC 130036 Query 87193 TTATGGGTGTCATAAATTATAAAGCCACAGAAAACAACAGCCCCAAACCCAGAAATAACT 87252 | ||| |||||||| || ||||||||||| || | ||||||| |||| | || Sbjct 130037 AGGTTGGTATCATAAATAATGAAGCCACAGAAGACCAGAGCCCCAGCTCCAGCCAGGACC 130096 Query 87253 AAATCTGCGCTATCACTGTTATAGAACAATTGTA 87286 || |||| || |||||||| | || || |||| Sbjct 130097 AACTCTGTACTGTCACTGTTGAAAAAGAACTGTA 130130 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 87328 CCTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCA 87387 ||||| |||| ||| || || ||| |||| || || || || |||| ||| | |||| | Sbjct 132929 CCTGCACCCATTTTGCTGAAGTCTCTCTTGGACTGGAACGTGTAGATTGTTAGTCCAGTA 132988 Query 87388 AACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445 ||||||||||| || | || | | ||| |||| || ||||||||||||||||||| Sbjct 132989 AACACAGCACAGGTCAGGAACAATGCTTGAAGTACTGTAGAGTATTCATAGAAGGTCA 133046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397308674736070