Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq251 147 2e-30 seq738 93.3 3e-14 >seq251 Length=594084 Score = 147 bits (162), Expect = 2e-30 Identities = 141/178 (79%), Gaps = 7/178 (4%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| |||||||||| || || || ||||||||||| || ||||||||||||||||| Sbjct 587593 CATGTCTTTGTACTCTGCACCAAAGTGTCTCCACTGGAAGCCATACACCGGTCCCAGGTC 587652 Query 30283 TCCCTCTTCCCTGTGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 30339 ||||| || | |||| ||||||| ||||||| ||||| | ||| |||||||| Sbjct 587653 GCCCTCCTCTC---GCTCTGTGAAGCCCAGATTGTCCAGGAAGTCCCGGGACCCGTTGGC 587709 Query 30340 GTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30396 ||||||||||| ||||| ||||| || ||||| |||| || || || |||| |||| Sbjct 587710 ATCCCAGATCTTCACCCCTTTCTCTGACAGCTCCTTGGCATTAGTTGATCCCTGTGAC 587767 Score = 143 bits (158), Expect = 2e-29 Identities = 136/174 (78%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || || | ||| || |||||||| || || || | ||||||||||||||| || || Sbjct 586422 AGTCCTGTAATGTGTGCGATCATGTAGGTCAGAAGTGCGTAGCTGGCGATGTTGAAAGGA 586481 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||||| || || || | |||||| |||||||| || ||||| || || | Sbjct 586482 ACTCCCAGACCCATATCACCTGAGCGCTGGTACAGCTGACAGGACAGCTCACCATCACAG 586541 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 ||||| |||||||| | ||||||||| ||||| |||||||||||| || |||| Sbjct 586542 ACGTAGAACTGACAGAGGGCGTGGCAGGGAGGCAGAGCCATGAGGGGCAGGTCT 586595 >seq738 Length=479450 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 110410 CTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAAC 110469 ||||| || || | ||| || |||| ||| |||||| ||||| || |||||||| ||| Sbjct 287055 CTGCTAAGAACGATGTTGATTCTGTTGTTCAAAGGTCTGTTCTTCTCTGGGATGGAAAAC 287114 Query 110470 CAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 || ||||| || ||||| |||||||| |||||||||||| Sbjct 287115 CATGTCTTCCTGCCCATAATCACCACATTCTGCTTGCCT 287153 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/121 (76%), Gaps = 4/121 (3%) Strand=Plus/Plus Query 110159 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAGTGTCGCACGCAA 110218 ||||||||| |||||||||| | ||| |||| | || |||| || ||||| ||| ||| Sbjct 283840 ACTCTGGCAATAGACGATATTTTTCTGGACTGATTTCAGGGAAGAATGTGTCACACTCAA 283899 Query 110219 ATTGCGTC--GACACGTGAGTGACAAACAGCCTCTTTATCCCCGGGCTCTCCATGAGCTC 110276 | ||| || || |||| ||||||| || ||| | | |||||||||||||| | ||| Sbjct 283900 ACTGCTTCAGGATTCGTG--TGACAAATAGTCTCCTGGTTCCCGGGCTCTCCATCAACTC 283957 Query 110277 C 110277 | Sbjct 283958 C 283958 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 110567 CAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCGGCCACGA 110626 |||||||||| ||||| | ||| || ||||| || |||| ||| |||||| ||||||| Sbjct 290671 CAGGATGCCAGGGCAGGTTTCCATTTTTCCCAATACCCAGGTCAGGACACAATGCCACGA 290730 Query 110627 TACCGTTCAGAATGAGGGGCATG 110649 |||||||||| ||| ||| |||| Sbjct 290731 TACCGTTCAGGATGCGGGACATG 290753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406159792670088