Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq365 98.7 7e-16 SEQ16359 95.1 8e-15 seq1673 93.3 3e-14 >seq365 Length=500478 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || ||||| ||||| || || ||||| ||| Sbjct 9158 ATGCAGATCTTCGTCAAGACACTCACTGGTAAAACCATCACCCTGGAGGTTGAGCCCAGT 9099 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| || || ||||||||||| | || |||||||| Sbjct 9098 GACACCATCGAGAACGTGAAAGCTAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAG 9039 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || || ||||| || ||||| |||| ||||| | || |||||| Sbjct 9038 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCTGACTACAAC 8979 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 8978 ATCCAGAAGGAATCCAC 8962 Score = 84.2 bits (92), Expect = 1e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || |||||||| || || || || ||||| || || || || || Sbjct 9815 AACATGCAGATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTAGAGGTGGAGCCC 9756 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | |||| | ||||||||||| | || ||||| Sbjct 9755 AGTGACACCATTGAGAATGTCAAGGCTAAAA-TCCAGGACAAAGAAGGCATTCCCCCAGA 9697 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC 23774 || ||| | || || || || ||||| || |||||||| | ||||| Sbjct 9696 CCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCAC 9649 >SEQ16359 Length=2539 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||| || || ||||| ||||| || || || || || Sbjct 2314 AAGATGCAGATCTTTGTGAAGACCCTGACTGGTAAAACAATCACCCTGGAGGTGGAGCCC 2373 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| |||| | | ||||||||||| | || || || Sbjct 2374 AGCGACACCATCGAGAATGTGAAAGCAAAGA-TCCAGGACAAAGAAGGCATCCCTCCTGA 2432 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || ||| | || ||||| || || || || ||||| | ||||| | ||| || Sbjct 2433 CCAGCAACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACCCTCTCCGACTA 2492 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 2493 CAACATCCAGAAGGAGTCCAC 2513 >seq1673 Length=142529 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| || || || || ||| Sbjct 40 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 99 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| |||| | | ||||||||||| | || || || || Sbjct 100 GACACCATTGAGAATGTGAAAGCAAAGA-TCCAAGACAAAGAAGGCATCCCTCCTGACCA 158 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || |||||||| | ||||| | || ||||| Sbjct 159 GCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 218 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 219 CATCCAGAAGGAGTCCAC 236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337884309770312