Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value SEQ16359 163 7e-35 seq365 152 1e-31 seq1673 140 8e-28 seq510 136 1e-26 >SEQ16359 Length=2539 Score = 163 bits (180), Expect = 7e-35 Identities = 170/221 (77%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || ||||| |||||||| |||||||| || ||| Sbjct 2320 CAGATCTTTGTGAAGACCCTGACTGGTAAAACAATCACCCTGGAGGTGGA--GCCCAGCG 2377 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || ||| |||||| |||||||||||||| |||||||| ||||||| Sbjct 2378 ACACCATCGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAGC 2437 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 2438 AACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACCCTCTCCGACTACAACA 2497 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || || || || || || | || ||| Sbjct 2498 TCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTGAGA 2538 >seq365 Length=500478 Score = 152 bits (168), Expect = 1e-31 Identities = 156/202 (77%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || ||||| || ||||| |||||||||||||| || || ||| Sbjct 4317 CAGATCTTCGTCAAGACACTCACTGGTAAAACCATCACCCTCGAGGTTGA--GCCCAGTG 4260 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || ||| ||||| |||||||| ||||| || ||||| ||||||| Sbjct 4259 ACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGC 4200 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | |||||||| ||||| ||||| |||||||| | || || | || || ||| Sbjct 4199 AGAGGTTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACA 4140 Query 178102 TCCAAAAAGAATCAACACTGCA 178123 ||||||||||||| || || || Sbjct 4139 TCCAAAAAGAATCCACCCTCCA 4118 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || ||||| || ||||| |||||||| ||||| || || ||| Sbjct 9155 CAGATCTTCGTCAAGACACTCACTGGTAAAACCATCACCCTGGAGGTTGA--GCCCAGTG 9098 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| ||| ||||| |||||||||||||| || || || || |||| Sbjct 9097 ACACCATCGAGAACGTGAAAGCTAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAGC 9038 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | |||||||| || || ||||| || || || | || || | || || ||| Sbjct 9037 AGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCTGACTACAACA 8978 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || || ||||| Sbjct 8977 TCCAGAAGGAATCCACCCTCCACCTTGT 8950 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || ||||| || || || |||||||| |||||||| || ||| Sbjct 4030 CAGATCTTTGTCAAGACACTCACTGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 3973 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| || || || || || ||||||| Sbjct 3972 ACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGC 3913 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 3912 AGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACA 3853 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || || ||||| Sbjct 3852 TCCAGAAGGAATCCACCCTCCACCTTGT 3825 Score = 116 bits (128), Expect = 9e-21 Identities = 121/157 (77%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| || || || || || |||||||| |||||||| || ||| Sbjct 9809 CAGATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTAGAGGTGGA--GCCCAGTG 9752 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| || || |||||||||||||| || || || ||||||| Sbjct 9751 ACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAGC 9692 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 | | | |||||||| || || ||||| |||||||| Sbjct 9691 AGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGG 9655 Score = 113 bits (124), Expect = 1e-19 Identities = 131/175 (75%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 177957 ATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGG 178014 |||||||| ||||| || || ||| ||||||||||||| ||||| ||||| |||| Sbjct 9350 ATCACCCTGGAGGTTGA--GCCCAGCGACACCATCGAGAATGTCAAGGCTAAGATCCAGG 9293 Query 178015 ACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAG 178074 |||||||||| || || || |||||||| | | ||||| || || || ||||| |||| Sbjct 9292 ACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAG 9233 Query 178075 ATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || | || || | || || ||| |||| || ||||| || || || ||||| Sbjct 9232 ACGGCCGCACCCTCTCTGACTACAACATCCAGAAGGAATCCACCCTCCACCTTGT 9178 >seq1673 Length=142529 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || ||||| || || || |||||||| |||||||| || ||| Sbjct 43 CAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 100 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || ||| |||||| || ||||||||||| |||||||| ||||||| Sbjct 101 ACACCATTGAGAATGTGAAAGCAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAGC 160 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 161 AGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 220 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 221 TCCAGAAGGAGTCCACCCTCCACCTGGT 248 >seq510 Length=807390 Score = 136 bits (150), Expect = 1e-26 Identities = 120/148 (81%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || ||||| |||||||| |||||||| || ||| Sbjct 1720 CAGATCTTTGTGAAGACCCTGACTGGTAAAACAATCACCCTGGAGGTGGA--GCCCAGCG 1663 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || ||| |||||| |||||||||||||| |||||||| ||||||| Sbjct 1662 ACACCATCGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAGC 1603 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCT 178069 |||| || ||||| || || || ||||| Sbjct 1602 AACGTCTGATCTTTGCTGGTAAGCAGCT 1575 Score = 136 bits (150), Expect = 1e-26 Identities = 120/148 (81%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || ||||| |||||||| |||||||| || ||| Sbjct 4380 CAGATCTTTGTGAAGACCCTGACTGGTAAAACAATCACCCTGGAGGTGGA--GCCCAGCG 4323 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || ||| |||||| |||||||||||||| |||||||| ||||||| Sbjct 4322 ACACCATCGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAGC 4263 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCT 178069 |||| || ||||| || || || ||||| Sbjct 4262 AACGTCTGATCTTTGCTGGTAAGCAGCT 4235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203262130778316