Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1696 562 4e-155 seq34 102 1e-16 seq1698 93.3 5e-14 >seq1696 Length=952724 Score = 562 bits (622), Expect = 4e-155 Identities = 1297/1944 (67%), Gaps = 21/1944 (1%) Strand=Plus/Minus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| || || || |||| | | ||||| || | || | || || || || || Sbjct 105957 TTCTTCATGTCCTCGCTCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGGTTG 105898 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | ||||| ||||| |||| || || || ||||| || || ||||| || | || Sbjct 105897 ACGATCTGAAACTCTCCTGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 105838 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 105837 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTTGGCATTGGAGCCAGCAGC 105778 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 | || || || | |||| | | || || || || || | | ||| | ||| || Sbjct 105777 AGGCTGTTCCTCACGCCGTGTTTGGCGACCTTCTCCTTCAGCGCCTTCCAGTCCCACAGG 105718 Query 53327 TCCGACGGTA-CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCC 53385 |||| || | | | | ||| | || |||||| | || || Sbjct 105717 TCCGTTGGCGTCTTCTTCCACATGTCGTACTGGAAGA-TGCCCTTACTGACCGGGGAACC 105659 Query 53386 TACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACC 53445 | | || || ||||| || || | | | |||| |||||||||||||| | ||| | Sbjct 105658 TTCGTACGTCTCGTAGGGGCCGTGTTCGGCGGCTAACTCACAACTCGCCTCCAGAGCAGC 105599 Query 53446 GTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGG 53505 ||| |||||||| || ||||| | | || || || || || |||| |||||||| Sbjct 105598 GTAGTAAATGGTCTCAAAGATTTGGATGTTGAGCAGCTGAGCCTCAGGGCTTTCAAATGG 105539 Query 53506 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 53565 |||| | || ||||| ||||| || |||||||| || ||||| || || || || || Sbjct 105538 ATAACGCATCAGGATAAAGGCGTCAGCCAATCCTTGGACTCCAATTCCTATTGGCCTGTG 105479 Query 53566 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 53625 | | ||||||| | | || ||| | || || || || || || ||||| || || Sbjct 105478 GCGCATATTAGACCTCTTGGCCTCTTCCACTGGGTAGTAGTTTATGTCGATAATCTTGTT 105419 Query 53626 GAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATT--GTCC 53682 | ||||||||||||||||||| |||| |||||| ||| ||| || | | | Sbjct 105418 TAAGTTTCTGACAATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCATAAGTCCGCTC 105359 Query 53683 ATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGC 53742 | | | || ||||||| | || || || |||||||| || || || ||||| | | Sbjct 105358 AGGTGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTGCAGACAGCCACCTCGTC--C 105301 Query 53743 ATCC--GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 53800 | | | |||| | || || ||||| || || || ||||||||||| || | ||| Sbjct 105300 TTGCTGGTGTATTCGACGATTTCTGTGCAGAGGTTGCTGCACTTGATGGTCCCCAGATTC 105241 Query 53801 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCA 53860 || || || ||||| |||| || || || || || || ||| | ||||| |||||||| Sbjct 105240 TGCTGGTTGCTCTTCCTGTTGCAGGCRTCTTTGTACAGCATGTACGGCGTCCCAGTTTCT 105181 Query 53861 ATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTC 53920 |||| || || || || || | ||| | ||||||| | | | ||| ||| Sbjct 105180 GTCTGTGACTCAATGATGGCGTACCACAGCTGCTGAGCCTTCACCACACGCTTGACCCTC 105121 Query 53921 TTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAAT 53980 || | |||||| || || | |||||||| || ||||| | ||||| Sbjct 105120 CCCTCCTTCTCGTATCTGGTGTAGAGCTCCTCAAACTCCTCCCCCCAGCACTCGTCCAGC 105061 Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 || || || || |||||||||||| ||||| ||| | | || || ||| | ||||| Sbjct 105060 CCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCATTATTCTCCACCCTCTTCATG 105001 Query 54041 AAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 54099 ||||| ||||| ||||| || || || ||| || || || | || || || || ||||| Sbjct 105000 AAGAGGTCAGGGATCCACAGGGCGTAGAAA-AGGTCCCTCGCTCGCTGCTCTTCCTTTCC 104942 Query 54100 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159 || ||||| || || || ||||| | | | |||| ||||||| || |||| ||| || Sbjct 104941 CGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAATGCCAGGGCTCCAGGTACAT 104882 Query 54160 GGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219 || | |||| || | |||||| || ||||| || | ||| | || ||||| || || Sbjct 104881 GGCGAAGGCTCCGGGTCTTTTGTTGCCCCCCTGGTCGACGTAACGTGCAGTGTTGTTGTA 104822 Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCA-CCATTGGTCCCGGAGATATAGCTTC 54278 || |||| ||| || | | |||||||| ||| || ||||| || | ||| ||||| | Sbjct 104821 GACCCTCAGCATGGGGACGAGCCCATTGGA-GCAGCCGTTGGTGCCAGCGATGTAGCTCC 104763 Query 54279 CACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 | | | | || || | | || || || || || ||| ||| ||||| | | Sbjct 104762 CTGTTGATCTGATGCAGCTGACCGCTACRCCGATTCCGCCGGCCGATTTGGAGATGAGGG 104703 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 ||||| | || | || || ||||||||||| || || || ||| |||| ||| || | Sbjct 104702 CGCATTGCTTCAGTGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATTGCAAGCAGGA 104643 Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 | |||||||||| || | | | ||||| ||||| || | ||| ||||| ||||| | Sbjct 104642 AGCAGCTAGACAGCTGTGGCCTGTTGGTTCCAGCATTGAAGAGGGTTGGAGAGGCGTGGG 104583 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGAT 54518 | ||||| || || || || || ||||| |||||||| |||| ||| |||||| | Sbjct 104582 TGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCGATGGCTGCGTCGATATCCGTCCCGT 104523 Query 54519 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 54578 | ||||| || || || | ||| | |||||| || || | ||| | | |||| ||| | Sbjct 104522 GGATTCCCACGGCCACTCTCATGAGCATGTGTTGCGGCCGCTCAGCCACCTTGCTGTCAA 104463 Query 54579 TTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 54638 | ||||||| |||||| |||| ||| || || || || ||||||| || || |||| Sbjct 104462 TCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTC 104403 Query 54639 GTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAA 54698 ||||| || || | |||||||| ||||| | | | ||| || || | || Sbjct 104402 TGTCGTAGATTATGGCCGAGTTGAGGCGGTCCTTGTTTGCGAGAACAACCTCGAGCGTCT 104343 Query 54699 TACTTGAAATAATCGGAGAAT---GTTTCCCATTTTTAGGATTGACATAGTTAAATAAAT 54755 | ||||| || || || | |||| || ||| |||| |||||| | | | Sbjct 104342 CTTTCGAAATCATGGGGGAGTGGCGTTT---GTTCAAAGGGTTGATGTAGTTATACAGGT 104286 Query 54756 CCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTC 54815 ||| ||| || || || || | ||| || || |||||||| || || || ||||| || | Sbjct 104285 CCTCCATGACATCGCTGAACACTTTCTTCGTCTCTTTGTGCAGGTTGGAGACGGCGATGC 104226 Query 54816 TAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTG 54875 || || || ||||| || || || | || || || |||||| || || || || | Sbjct 104225 GTGCAGCGAGGATGGCGTAGTCGGGGTATTTGGTGGTGAGAGTGGCAGCAATCTCTGCCG 104166 Query 54876 TCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 54935 ||| ||||| | || || || || || || | || | || ||||| |||||||||| Sbjct 104165 CCAGTGTGTCGAGCTCCACGGTGGTGACCCCGCTGTACAAACCCTGGATCACCTTCATAG 104106 Query 54936 CTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AATACGA 54994 || | || || | | || ||| | ||||| || || |||| |||||| Sbjct 104105 TGATCTGGGCTGGGTCAACAAACTCCAAGTTCAGCCCATAGCA-AAGCTTCTGGATACGA 104047 Query 54995 GATGTGATTTTATCAAACATGACA 55018 || ||||||||||||||||||||| Sbjct 104046 GAGGTGATTTTATCAAACATGACA 104023 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || || ||||| || || || ||| || |||| || ||||| ||||| | Sbjct 106651 TCCAGCCATAGAAGTGCATGCTGGTAAGCTTGCCGTAGTTCGGCTCGGCTATGTGGATGT 106592 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| ||| || || || ||||||||||| || | ||| || ||||| || | | || | Sbjct 106591 TCAGAGACTGGCTCTGGTCGATGAAGGCGCCACGGTCAGCGGCCATCTTGAGTACTGTTT 106532 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043 | || | || ||||| | ||||||||| | |||| | ||| ||||| Sbjct 106531 TCTGGGAGATCTCCCACACAGTTTTATACAGCTGCTTCAAATCATCTGG 106483 >seq34 Length=1455329 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 || || ||||| ||||| || | |||||||| || | |||||| ||||| ||||| || Sbjct 919624 ATTTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTGCTCTTCCTG 919683 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAAT 53877 || || |||||||| ||||| || |||||||||||||||| |||| ||||| || || Sbjct 919684 TTGCAGGCATCCTTGTAAAGCATATATGGCGTACCAGTTTCTGTCTGCGATTCAATGAT 919742 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || || ||||| | ||||||||||| || || ||||| || || || || | ||| Sbjct 923299 GTGCCAGCGTTAAACAGTGTAGGAGAAGCATGAGTGAACCACTTCTCTGACAGCAAGTTG 923358 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || ||||| || |||| || || || | || |||||| || |||| || | ||||| | Sbjct 923359 TAGGTCTCAATGGCTGCATCAATGTCTCCTTTATGAATCCCGACTGACACTCTCATTAGC 923418 Query 54545 ATGTGCTGAGGTCTTTCA 54562 |||||||| ||||| ||| Sbjct 923419 ATGTGCTGGGGTCTCTCA 923436 >seq1698 Length=2458952 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 ||||||| || ||||| | |||||||| | || ||||| ||||||||||| | ||| | Sbjct 826487 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGTCCAGGCATTAGGCCCCTCTTCT 826428 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| | || | |||||||| ||||| |||||||| || || || || ||||| | Sbjct 826427 TTAACCAGTAGATAGCAGCAAATGAACCAGAGAAGAAAATGCCCTCCACAGCTGCAAAAG 826368 Query 24277 CAATAAGTCTTTCTCC 24292 | | || ||| || || Sbjct 826367 CCACAATTCTCTCCCC 826352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593672343371760