Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1605 129 5e-25 seq33 118 9e-22 >seq1605 Length=404251 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || || || | ||||||| || | ||||||||||| || ||||| ||||| Sbjct 108204 GTTTCCTCCACGGAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 108263 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | |||||| || | || |||||||| || || || | || || ||||||||||| Sbjct 108264 GGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCTGCGAAGATGAGCCTCTGCTGGTCAGG 108323 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | ||| || ||||| |||||| ||||| | | | || |||| |||||| Sbjct 108324 AGGGATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTC 108383 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | ||||| ||| ||||||||||| || | || |||||||| || ||||| Sbjct 108384 CACTTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 108434 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| ||| | || || ||||||||||| || | ||||||||| || |||||| Sbjct 108729 TTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTA 108788 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||||| | | | || |||| ||||||| |||| ||| |||||||||||||| Sbjct 108789 GCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 108848 Query 21153 AACGTTTTGACAAATATTTGCATTTT 21178 | || |||||||| || ||||| || Sbjct 108849 AGGGTCTTGACAAAGATCTGCATCTT 108874 >seq33 Length=2144867 Score = 118 bits (130), Expect = 9e-22 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | |||||| || | || |||||||| ||||| Sbjct 1190936 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 1190877 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || ||||||||||| ||| | ||| ||||| || |||||| |||| Sbjct 1190876 GCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTAGCTTTC 1190817 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| |||||| |||| ||| ||||||||||| || | ||| Sbjct 1190816 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTT 1190757 Query 21159 TTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 1190756 TTCACRAAGATCTGCAT 1190740 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | |||||| || | || |||||||| ||||| Sbjct 1190480 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 1190421 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | ||| |||||||| ||| || || Sbjct 1190420 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTT 1190361 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | |||||| |||| ||| ||||||||||| || | || Sbjct 1190360 ACATTTTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 1190301 Query 21159 TTGACAAATATTTGCATTTT 21178 |||||||| || ||||| || Sbjct 1190300 TTGACAAAGATCTGCATCTT 1190281 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | |||||| || | || |||||||| ||||| Sbjct 1190708 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 1190649 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| || | |||||| ||||| ||| || || Sbjct 1190648 GCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTT 1190589 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | |||||| |||| ||| ||||||||||| || | ||| Sbjct 1190588 ACATTTTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTT 1190529 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 1190528 TTCACAAAGATCTGCAT 1190512 Score = 104 bits (114), Expect = 2e-17 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| || | ||||||||||| || ||||| ||||| | || Sbjct 1213476 CCCCTC--AGACGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACA 1213419 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| ||||| || | || || ||||||||||| ||| | Sbjct 1213418 GAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAA 1213359 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||| ||||| ||| || ||||| | | | || || | |||||| | Sbjct 1213358 TCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCT 1213299 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 ||| ||| ||||||||||| || | || ||||| || || ||||| || Sbjct 1213298 CCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATCTT 1213250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422225044113092