Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1605 147 2e-30 seq33 143 3e-29 seq913 120 3e-22 seq1698 109 6e-19 >seq1605 Length=404251 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| ||||||||| | || || || ||| Sbjct 108434 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 108375 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||||||||||||||| | |||||| Sbjct 108374 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAGGGCATCCCTCCTGACCAG 108315 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| ||| || || |||||||| || | |||||||| |||||||||| Sbjct 108314 CAGAGGCTCATCTTCGCAGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 108255 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||| |||| || || || ||| ||||| Sbjct 108254 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGC 108219 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| |||||||| || | |||||||| |||||||||||||||||| Sbjct 108533 ATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAACATCCAGAAG 108474 Query 40879 GAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| |||| || || || ||| |||| ||||||| ||| Sbjct 108473 GAGTCCACCCTCCACCTGGTGCTGCGTCTGAGGGGAGGC 108435 >seq33 Length=2144867 Score = 143 bits (158), Expect = 3e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| || || ||||| ||||| ||||||||| | || || || | Sbjct 1213249 AAAGATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCC 1213308 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || ||||| | | | | | |||| ||||| | |||||||| || || ||| | || Sbjct 1213309 CAGCGACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATTCCCCCTGA 1213368 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| ||| ||||| |||||||| || | ||||| || ||||| Sbjct 1213369 CCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCTGACTA 1213428 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| |||| || || || || | || ||||||| ||| Sbjct 1213429 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTTCTCCGTCTGAGGGGTGGC 1213480 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || ||||| ||||| ||||||||| | || || || | Sbjct 1190280 AAAGATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCC 1190339 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || ||||| | ||| | |||| ||||| | ||||| |||||||| ||| | || Sbjct 1190340 CAGCGACACAATTGAAAATGTAAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCTGA 1190399 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || ||||| |||||||| || | |||||||| ||||| Sbjct 1190400 CCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 1190459 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| |||| || || || || |||| | ||||| || Sbjct 1190460 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGTCTCAGGGGTGG 1190510 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| ||||| ||||||||| | || || || ||| | Sbjct 1190512 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 1190571 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||||| | |||||||| ||||| || | |||||| Sbjct 1190572 GACACAATTGAAAATGTAAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCCGACCAG 1190631 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 1190632 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 1190691 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || || || |||| | ||||| ||| Sbjct 1190692 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGGC 1190739 Score = 134 bits (148), Expect = 1e-26 Identities = 166/225 (74%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| ||||| ||||||||| | || || || ||| Sbjct 1190740 ATGCAGATCTTYGTGAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 1190799 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || | || || | || || |||||||| ||| | ||||| Sbjct 1190800 GACACCATTGAGAACG-TGAAAGCTAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCA 1190858 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| ||||| |||||||| || | |||||||| |||||||| Sbjct 1190859 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 1190918 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGG 40913 ||||||||||||| |||| || || || || |||| | ||||| Sbjct 1190919 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGTCTCAGGGG 1190963 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || |||||||| ||| | |||||||| | || |||| || || || |||||||| Sbjct 1213726 GATAAGGAGGGCATTCCCCCTGACCAGCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAA 1213785 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| ||||||||||||||||||||| |||| || || || || || Sbjct 1213786 GATGGACGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTG 1213845 Query 40903 CGCTTGAGGGGCGG 40916 || | || ||||| Sbjct 1213846 CGTCTCAGAGGCGG 1213859 >seq913 Length=88738 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| ||||||| ||||| ||||| ||||| ||||||| || ||| || ||| Sbjct 60839 GGAGAGCGTGTGGTGGCTTTCGCCGCCGTGGAGGGGATCTTCTTCTCTGGCTCCTTTGCC 60898 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| ||||| |||||||| ||| |||||||||| Sbjct 60899 GCCATCTTCTGGCTGAAGAAGAGGGGCCTGATGCCGGGCCTGACCTTCTCCAACGAGCTC 60958 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 60959 ATCAGCAGAGACGAGG 60974 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| ||||||| ||||| ||||| ||||| ||||||| || ||| || ||| Sbjct 73600 GGAGAGCGTGTGGTGGCTTTCGCCGCCGTGGAGGGGATCTTCTTCTCTGGCTCCTTTGCC 73541 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| ||||| |||||||| ||| |||||||||| Sbjct 73540 GCCATCTTCTGGCTGAAGAAGAGGGGCCTGATGCCGGGCCTGACCTTCTCCAACGAGCTC 73481 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 73480 ATCAGCAGAGACGAGG 73465 Score = 116 bits (128), Expect = 4e-21 Identities = 102/126 (81%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATT 116744 ||||||| |||||||||||| | |||||||| | |||| ||| | |||||| | | Sbjct 60246 AGGTGGATCTGTCCAAGGACCTGCAACACTGGGAGACCCTGAAGGACGAAGAGCGCTACT 60305 Query 116745 TCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGG 116804 ||||| |||||| ||||||| || ||||||||||| ||||||||||||||||| |||| Sbjct 60306 TCATCTCCCACGTGTTGGCCTTCTTTGCCGCCAGCGATGGCATCGTCAACGAGAACCTGG 60365 Query 116805 TCGAGC 116810 | |||| Sbjct 60366 T-GAGC 60370 Score = 116 bits (128), Expect = 4e-21 Identities = 102/126 (81%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATT 116744 ||||||| |||||||||||| | |||||||| | |||| ||| | |||||| | | Sbjct 74193 AGGTGGATCTGTCCAAGGACCTGCAACACTGGGAGACCCTGAAGGACGAAGAGCGCTACT 74134 Query 116745 TCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGG 116804 ||||| |||||| ||||||| || ||||||||||| ||||||||||||||||| |||| Sbjct 74133 TCATCTCCCACGTGTTGGCCTTCTTTGCCGCCAGCGATGGCATCGTCAACGAGAACCTGG 74074 Query 116805 TCGAGC 116810 | |||| Sbjct 74073 T-GAGC 74069 Score = 111 bits (122), Expect = 2e-19 Identities = 96/117 (82%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||| ||||||||| | ||||| ||||| |||||||| || || Sbjct 60450 GGTGGAGCGGTTCACACAGGAAGTGCAGGTGACGGAGGCCCGGTGTTTCTACGGTTTCCA 60509 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | |||||||| ||||| | || || |||||||||||| Sbjct 60510 GATCGCCATGGAGAACATCCACTCGGAGATGTA--CAGCCTGCTGATCGACACGTAC 60564 Score = 111 bits (122), Expect = 2e-19 Identities = 96/117 (82%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||| ||||||||| | ||||| ||||| |||||||| || || Sbjct 73989 GGTGGAGCGGTTCACACAGGAAGTGCAGGTGACGGAGGCCCGGTGTTTCTACGGTTTCCA 73930 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | |||||||| ||||| | || || |||||||||||| Sbjct 73929 GATCGCCATGGAGAACATCCACTCGGAGATGTA--CAGCCTGCTGATCGACACGTAC 73875 >seq1698 Length=2458952 Score = 109 bits (120), Expect = 6e-19 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || ||||| || ||||||||| | ||||| || || |||||||| || ||||||||| Sbjct 824678 GAACCTCTGCTCCGAGAGAACCCCAGGCGGTTTGTCATCTTCCCCATTCAGTACCCGGAC 824737 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGG 116690 || ||| ||||||||| |||| |||| || |||||||| || |||||||||| Sbjct 824738 ATCTGGAAGATGTACAAACAGGCTCAGGCCTCTTTCTGGACGGTGGAGGAGGTGG 824792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515176456127120