Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq33 114 1e-20 seq1696 105 6e-18 >seq33 Length=2144867 Score = 114 bits (126), Expect = 1e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| || || ||||| ||| || Sbjct 1190948 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 1190889 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| || | |||||| ||||| || ||||||||||| || Sbjct 1190888 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGG 1190829 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | || | |||||| || ||| ||||| | ||| | || ||| Sbjct 1190828 ATCTTAGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTG 1190769 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| || || ||||||||| Sbjct 1190768 CCAGTGAGGGTTTTCACRAAGATCTGCATG 1190739 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| || || ||||| ||| || Sbjct 1190492 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 1190433 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| || | |||||| || || || |||||||||||||| Sbjct 1190432 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGG 1190373 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | ||| | ||||| || ||| ||||| | ||| | || ||| Sbjct 1190372 ATTTTGGCCTTTACATTTTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTG 1190313 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| |||||||| Sbjct 1190312 CCAGTGAGGGTCTTGACAAAGATCTGCAT 1190284 >seq1696 Length=952724 Score = 105 bits (116), Expect = 6e-18 Identities = 441/684 (64%), Gaps = 32/684 (5%) Strand=Plus/Minus Query 133284 TCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACC 133343 |||| || ||||||||||| || ||||| || || | ||||| ||||| |||| | Sbjct 105840 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTTGGCATTGGAGCCAGC 105781 Query 133344 AACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCAC 133403 | || ||| || ||||||| ||| | || || || | |||||||||||| Sbjct 105780 AGCAGGCTGTTCCTCACGCCGTGTTTGGCGACCTTCTCCTTCAGCGCCTTCCAGTCCCAC 105721 Query 133404 AGATT-GTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATACC 133462 || | ||||| ||| || || | | || || | || || || || Sbjct 105720 AGGTCCGTTGG------------CGTCTTCTTCCACAT-GTCGT---ACTGGAAGATGCC 105677 Query 133463 CCTGCTCACCGG---ACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTC 133519 | | || ||||| || || ||||| || ||||| |||| ||| | ||| Sbjct 105676 CTTACTGACCGGGGAACCTTC---GTACGTCTCGTAGGGGCCGTGTTCGGCGGCTAACTC 105620 Query 133520 GCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATT-GAATAGTTGACGAACC 133578 || || ||||||| ||| || |||||||||| || |||| | || ||||| | | | Sbjct 105619 ACAACTCGCCTCCAGAGCAGCGTAGTAAATGGTCTCAAAGATTTGGAT-GTTGA-GCAGC 105562 Query 133579 TG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAACCCTG 133636 || || || ||| || | | ||| || | || | ||| ||||| ||||| || || Sbjct 105561 TGAGCCTCAGGGCTTTCAAATG-GATAACGCATCAGGATAAAGGCGTCAGCCAATCCTTG 105503 Query 133637 TATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATA 133696 | || | || || || | || |||| ||||| | ||| || || || Sbjct 105502 GACTCCAATTCCTATTGGCCTGTGGCGCATATTAGACCTCTTGGCCTCTTCCACTGGGTA 105443 Query 133697 GTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAG 133756 || ||| | |||||| |||||||| | || | ||| || | ||| |||| | | ||| Sbjct 105442 GTAGTTTATGTCGATAATCTTGTTTAAGTTTCTGACAATTACTTTGGTCACAGATGCCAG 105383 Query 133757 CAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGC 133816 | ||||| | ||| || | || |||| || |||||| || || ||| Sbjct 105382 TTTTTTAAAGTCATAAGTCC--GCTCAGGTGT-GACGTACATGTTGAGAGCGATGGAGGC 105326 Query 133817 TAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGAGGTT 133876 ||||| || || ||| ||||| || | | || | |||||| || | ||||||||| Sbjct 105325 CAGATTGCAGACAGCCACCTCGTCCTTGCTGGTGTATTCGACGATTTCTGTGCAGAGGTT 105266 Query 133877 GCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTA 133936 |||||| |||||||| |||| ||| | || ||||| | ||||| || ||||| Sbjct 105265 GCTGCACTTGATGGTCCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTCTTTGTA 105206 Query 133937 TAGCATGTACGGCCCGCCGGTTTC 133960 |||||||||||| || ||||| Sbjct 105205 CAGCATGTACGGCGTCCCAGTTTC 105182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433795308136804