Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq33 109 6e-19 seq1357 104 3e-17 seq1787 102 9e-17 seq5784 100 3e-16 seq1033 100 3e-16 seq143 100 3e-16 seq490 96.9 4e-15 seq115 96.9 4e-15 seq935 87.8 2e-12 >seq33 Length=2144867 Score = 109 bits (120), Expect = 6e-19 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 42960 CCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGA 43019 || || | ||||| |||| || | ||| |||||| || || ||||| |||| ||| Sbjct 1190963 CCCCTGAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGG 1190904 Query 43020 GTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACG 43079 || || | || || |||||||| |||||||| || || | ||||||||||| || | | Sbjct 1190903 GTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATG 1190844 Query 43080 CTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCG 43139 | |||||| ||| ||| || ||| | || | | ||||| || | || || || Sbjct 1190843 CCCTCCTTATCCTGGATCTTAGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCC 1190784 Query 43140 ACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | |||||||| ||||| || || || || || ||||| ||||| Sbjct 1190783 AGGGTGATGGTCTTGCCAGTGAGGGTTTTCACRAAGATCTGCAT 1190740 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| ||| || || | || || |||||||| || || || Sbjct 1190703 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 1190644 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||||| || | || || |||||| |||||| || | | Sbjct 1190643 GATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTTACATT 1190584 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||||| | || || || | |||||||| ||||| || || || || || Sbjct 1190583 TTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCAC 1190524 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 1190523 AAAGATCTGCAT 1190512 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 ||||| || ||||| | ||||| |||| || | ||| |||||| || || ||||| Sbjct 1213865 TATTGACCGCCTCTGAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAG 1213806 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 |||| ||| || || | || || |||||||||||||| || || || | ||||||||| Sbjct 1213805 TCAGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCA 1213746 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTT 43099 | || | || |||||| ||| ||| || Sbjct 1213745 GGGGGAATGCCCTCCTTATCCTGGATCTT 1213717 >seq1357 Length=1100848 Score = 104 bits (114), Expect = 3e-17 Identities = 74/85 (87%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 60057 AAAAATTTT----CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 ||||||||| |||| || | ||||||||||||| ||||||||||||||||||||| Sbjct 1093135 AAAAATTTTTTTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 1093194 Query 60113 ATACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||| |||||| Sbjct 1093195 ATACTCACCACTATACTAACGAGGA 1093219 Score = 102 bits (112), Expect = 9e-17 Identities = 82/98 (84%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 60042 AAATTAACGTTTATGAAAAATTTTC--TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGC 60099 ||||||| || | ||| ||||| ||| || | ||||||||||||| |||||||||| Sbjct 1092312 AAATTAAAGTGAAAAGAAAGTTTTCACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGC 1092371 Query 60100 GTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||||||||| |||||||||||||||||| |||||| Sbjct 1092372 GTGACAGGCGGGGATACTCACCACTATACTAACGAGGA 1092409 >seq1787 Length=100265 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || |||| || |||| || | ||||||||||||| ||||||||||||||||||||| | Sbjct 16403 ATAAAAAGTTACCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 16462 Query 60114 TACTCACCACTATACTACCGAGGA 60137 ||||||||||||||||| |||||| Sbjct 16463 TACTCACCACTATACTAACGAGGA 16486 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 14346 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 14405 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 14406 TACTAACGAGGAGTG 14420 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 18569 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 18628 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 18629 TACTAACGAGGA 18640 >seq5784 Length=1137 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1061 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1120 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 1121 TACTAACGAGGACTG 1135 >seq1033 Length=355194 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 92724 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 92783 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 92784 TACTAACGAGGAGTG 92798 >seq143 Length=2590508 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||||| | ||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 923558 AAAAATTTGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 923499 Query 60116 CTCACCACTATACTACCGAGGA 60137 || |||||||||||| |||||| Sbjct 923498 CTAACCACTATACTAACGAGGA 923477 >seq490 Length=1568546 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1010803 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1010862 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1010863 ATACTAACGAGGA 1010875 >seq115 Length=788868 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/82 (87%), Gaps = 3/82 (4%) Strand=Plus/Plus Query 60059 AAATTTT---CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||||| |||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 755288 AAATTTTGGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 755347 Query 60116 CTCACCACTATACTACCGAGGA 60137 || |||||||||||| |||||| Sbjct 755348 CTAACCACTATACTAACGAGGA 755369 >seq935 Length=447198 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 5261 CTCCCCGTCGGGGAATCGAACCYCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 5320 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 5321 TACTAACGAGGA 5332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571770160582360