Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1605 123 2e-23 seq33 123 2e-23 >seq1605 Length=404251 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | |||||||||||| | || || ||||| |||||||||||||| Sbjct 108207 TCCTCCACGGAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 108266 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| | || |||| |||||| |||||||| ||||||| ||||||||| || Sbjct 108267 CAGGGTGCGGCCATCTTCCAGCTGCTTTCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGG 108326 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| ||||| ||| | || | || | || | | || || Sbjct 108327 GATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 108386 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || || |||||||||||||| Sbjct 108387 TTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 108434 >seq33 Length=2144867 Score = 123 bits (136), Expect = 2e-23 Identities = 158/216 (73%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | || || ||||| ||||||||||| ||||| ||| | || Sbjct 1190496 CAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 1190437 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| || || || |||| ||||||||| ||| | || ||||||||| Sbjct 1190436 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTC 1190377 Query 34297 GGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 || ||||| ||||| || | || | ||| | | || || |||| |||||| Sbjct 1190376 --CTGGATTTTGGCCTTTACATTTTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATG 1190319 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| ||||| || || ||||||||||||||| Sbjct 1190318 GTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATC 1190283 Score = 120 bits (132), Expect = 2e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | || || ||||| ||||||||||| ||||| ||| | || Sbjct 1190952 CAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 1190893 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| ||||| || |||| |||||||||| ||| | || |||||| || Sbjct 1190892 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATC 1190833 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 ||| || ||||| | | | || | || | | || || |||| ||||||| Sbjct 1190832 CTGGATC-TTAGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGG 1190774 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | ||||| ||||| |||||||| ||||||||||| Sbjct 1190773 TCTTGCCAGTGAGGGTTTTCACRAAGATCTGCAT 1190740 Score = 118 bits (130), Expect = 7e-22 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| ||||| ||| | || |||| ||||||||| || || Sbjct 1190702 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 1190643 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || |||| |||||||||| || | || || ||||| || ||||| ||||| || Sbjct 1190642 ATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTC--CTGGATTTTGGCCTTTACAT 1190585 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||| | | || || |||| |||||||| ||||| ||||| ||||||| Sbjct 1190584 TTTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCA 1190525 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 1190524 CAAAGATCTGCAT 1190512 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| ||||| ||| | || Sbjct 1213464 AGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCT 1213405 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| ||||| || |||| ||||||||| ||| | | || ||||| Sbjct 1213404 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATCCCTTCTTTGTC- 1213346 Query 34298 GCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||||| ||| | || | || | ||| | | || || |||| ||||||| Sbjct 1213345 -CTGGATTTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGG 1213287 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | ||||| ||||| || || || |||||||||||| Sbjct 1213286 TCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATC 1213252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323045867210720