Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq477 284 8e-72 >seq477 Length=3806738 Score = 284 bits (314), Expect = 8e-72 Identities = 606/895 (68%), Gaps = 18/895 (2%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||| | || ||| ||| ||||||||||| ||||| |||||| |||| ||||| Sbjct 2334766 CCTCTCAGTGAGGAGGAGAAAGAATTCCCCATTGCATACTCCATGGTGATCCACGAGAAC 2334707 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || || | ||||| ||||| || ||||| || ||||| ||||||||||| |||||||| Sbjct 2334706 ATCGAGATGTTTGAGCGGCTTCTACGAGCTGTTTATGCTCCTCAGAACATCTACTGTGTA 2334647 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || |||| |||| ||| | | | || || ||||| || | ||| |||| ||| Sbjct 2334646 CATATGGACCTGAAATCCTCTGCAAAATTTAAGGAGGCTGTGGCAGGTATTGTTTCATGC 2334587 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || || ||||| || | |||||||| || | ||||| ||||||||||||| |||| Sbjct 2334586 TTTCCTAATGTGTTTGTAGCCAGTAAATTAGAAAGAGTGGTATATGCCTCCTGGTTCAGA 2334527 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-GTGCCATGGAAGTA 107986 || || || || ||||| || ||| |||| |||| | || ||| || |||| ||| Sbjct 2334526 GTTCAGGCAGATCTGAATTGCATGAAAGATCTGCTGAACAG-TCATGTTAACTGGAGGTA 2334468 Query 107987 CTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGC 108046 | | || || || || ||||||||||||||||| || || ||| |||||||| || Sbjct 2334467 CCTGCTTAACACCTGTGGGACAGACTTCCCCATCAAAACAAATAGAGAGATGGTAAGAGC 2334408 Query 108047 CCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaa 108106 || ||| | || || | |||||| |||||||||| | ||||||| | ||| || Sbjct 2334407 ACTGAAGTCCCTCAATGGGAGGAACAGCTTGGAGTCTGAAGCCACTTCTGACTACAAGAA 2334348 Query 108107 aaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAG-CAAGATGA 108165 || ||| ||| |||| | ||| | | ||| ||| | || | ||| ||||| Sbjct 2334347 AATTCGTTGGCAATATCACTACAATATCACAAACAGTGT-TATCAGGACAGATGTGATGA 2334289 Query 108166 AGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTC 108225 | ||| || ||| || | || |||||| |||| ||||| || ||||||| || Sbjct 2334288 AAAGCCCCCCACCTATTAGCATCCCTATGTTCTCAGGAAATGCTTACTTTGTGGTYTCAA 2334229 Query 108226 GAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCA 108285 |||| ||||| |||| || | | || | || | | | | || |||| | Sbjct 2334228 GAGCTTTTGTGGAACACGTGATGCAGGACGGAGAGGTTCAGAAATTTCTGGAGTGGGAAA 2334169 Query 108286 AAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGCTCCGTGGAT 108343 | ||||| || ||||| ||||||||| | |||||||| || ||| | ||| | || | Sbjct 2334168 AGGACACATACAGCCCTGACGAACACTTATGGGCCACTCTACAGAGGATGCCCTCTG--T 2334111 Query 108344 GCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 ||||| || | ||| || |||| | | | ||||||||| ||| | || | Sbjct 2334110 TCCTGGATCATTGCCTCAAAACAATAAGTTTGATGTGTCAGACATGCTAGCCGTTGCTCG 2334051 Query 108404 GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTG 108463 || |||||| || | ||||| | | || ||| || || |||| ||| || Sbjct 2334050 TGCAGTGAAGTGGATCTATTCAGCAGGAGACATGAACAAGGGAGCACCCTATGAACCATG 2333991 Query 108464 CTCTG--GAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATT 108521 | | | || | || | || || |||| | || || | || ||||| | ||| Sbjct 2333990 CACGGGTGATTACA--GAAGAGCTGTCTGTGTGTATGGAACTGGTGACCTCCAGTGG--- 2333936 Query 108522 CTCCAGAACCATCACC---TCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATA 108573 |||| ||| || |||| |||| |||||||||||||| || ||| ||||||| Sbjct 2333935 CTCCTGAAACAACACCACTTCTTTGCAAACAAGTTTGATCCAGAGGTTGATGATA 2333881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348240629080938