Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1696 489 1e-133 seq34 114 1e-20 seq33 104 2e-17 seq913 86.0 6e-12 >seq1696 Length=952724 Score = 489 bits (542), Expect = 1e-133 Identities = 1064/1590 (67%), Gaps = 31/1590 (2%) Strand=Plus/Minus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 ||| |||||| || | | |||| ||||||| ||| ||| |||| || | |||||| Sbjct 105945 TCGCTCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGGTTGACGATCTGAAAC 105886 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || || |||| || | ||| ||| |||||| ||| | | |||| || || ||| Sbjct 105885 TCTCCTGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTG 105826 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || ||||| ||||| ||||| || || || ||||| || |||| ||| || ||| ||| Sbjct 105825 TTGCCCAGGATCTGGGCGGTGGAGGCCGTTGGCATTGGAGCCAGCAGCAGGCTGTTCCTC 105766 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | |||||| || | | || ||| ||| | |||||||||||| || | |||||| Sbjct 105765 ACGCCGTGTTTGGCGACCTTCTCCTTCAGCGCCTTCCAGTCCCACAGGTCCGTTGGCGTC 105706 Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTT 22708 || | |||||| ||||| || || | ||| ||| ||||| ||||||||||| Sbjct 105705 ---TTCTTCCACATGTCGTACTGGAAGATGCCCTTACTGACCGGGGAACCTTCGTACGTC 105649 Query 22709 TCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATA 22768 ||||| || || | | ||||| | || || |||||||||| || |||| || || Sbjct 105648 TCGTAGGGGCCGTGTTCGGCGGCTAACTCACAACTCGCCTCCAGAGCAGCGTAGTAAATG 105589 Query 22769 GTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGAC-----GCTTTCGTACGGCATAC 22823 ||||| ||||||| |||| | || || | | | |||||| | || || Sbjct 105588 GTCTCAAAGATTTGGATGTTGA-----GCAGCTGAGCCTCAGGGCTTTCAAATGGATAAC 105534 Query 22824 GCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCA 22883 |||||| | || ||||| |||| || || || || || || || || | || || Sbjct 105533 GCATCAGGATAAAGGCGTCAGCCAATCCTTGGACTCCAATTCCTATTGGCCTGTGGCGCA 105474 Query 22884 GATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGT 22943 ||| ||| || ||||| || || || | || ||||| | |||| |||| Sbjct 105473 TATTAGACCTCTTGGCCTCTTCCACTGGGTAGTAGTTTATGTCGATAATCTTGTTTAAGT 105414 Query 22944 TTCTGGTCACAATT---TTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAA--CGCCCGA 22998 ||||| |||||| || || | | |||||| ||| ||| | Sbjct 105413 TTCTG---ACAATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCATAAGTCCGCTCAG 105357 Query 22999 TTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTT 23058 ||| || || |||||| ||||| ||||| |||||||| || ||||||||||| || Sbjct 105356 GTGTG--ACGTACATGTTGAGAGCGATGGAGGCCAGATTGCAGACAGCCACCTCGTCCTT 105299 Query 23059 GGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT 23118 | ||||| || || ||||| || || || ||||| ||||| || || |||| ||| Sbjct 105298 GCTGGTGTATTCGACGATTTCTGTGCAGAGGTTGCTGCACTTGATGGTCCCCAGATTCTG 105239 Query 23119 CTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGAC 23178 ||||||||| || | ||||| | || ||||| |||||||||||||| || || || Sbjct 105238 CTGGTTGCTCTTCCTGTTGCAGGCRTCTTTGTACAGCATGTACGGCGTCCCAGTTTCTGT 105179 Query 23179 CTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCC 23238 ||| ||||| ||||| || ||||| |||||| | || ||| | ||| || Sbjct 105178 CTGTGACTCAATGATGGCGTACCACAGCTGCTGAGCCTTCACCACACGCTTGACCCTCCC 105119 Query 23239 TTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC 23298 || | |||||| | ||| | | | ||||| || | || | || ||| |||| || Sbjct 105118 CTCCTTCTCGTATCTGGTGTAGAGCTCCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCC 105059 Query 23299 GGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAA 23358 ||| | | ||||||||| || ||| | | ||| || || | |||| || Sbjct 105058 GGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCATTATTCTCCACCCTCTTCATGAA 104999 Query 23359 AAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGT 23418 || || || ||||| || |||||||| || || | || ||| ||| || || || || Sbjct 104998 GAGGTCAGGGATCCACAGGGCGTAGAAAAGGTCCCTCGCTCGCTGCTCTTCCTTTCCCGT 104939 Query 23419 GTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGC 23478 |||||| |||| |||| ||||| ||||| || |||||| ||||| ||||| | ||| Sbjct 104938 GTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAATGCCAGGGCTCCAGGTACATGGC 104879 Query 23479 AAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACAC 23538 || || || ||||| || ||||| ||||| ||||||||||| || ||||||||||| || Sbjct 104878 GAAGGCTCCGGGTCTTTTGTTGCCCCCCTGGTCGACGTAACGTGCAGTGTTGTTGTAGAC 104819 Query 23539 TCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACC 23595 || ||||| || ||||| || ||||| |||| ||| || | ||| || Sbjct 104818 CCTCAGCATGGGGACGAGCCCATTGGAGCAGCCGTTGGTGCCAGCGATGTAGCTC---CC 104762 Query 23596 TTTTGCTCGAACGTTG-TGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCG 23654 | ||| || | | | ||| || | || || || ||| ||||||| || || | | Sbjct 104761 TGTTGATCTGATGCAGCTGACCG-CTACRCCGATTCCGCCGGCCGATTTGGAGATGAGGG 104703 Query 23655 CGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGA 23714 ||||||| ||||| |||||||||||||||||||||||||| || || | || | || || Sbjct 104702 CGCATTGCTTCAGTGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATTGCAAGCAGGA 104643 Query 23715 AACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCG 23774 | || ||||| || | || || | || ||| || || || |||||| | Sbjct 104642 AGCAGCTAGACAGCTGTGGCCTGTTGGTTCCAGCATTGAAGAGGGTTGGAGAGGCGTGGG 104583 Query 23775 TAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGT 23834 | || | | ||||| || ||||| || |||||||| || || || ||| |||| Sbjct 104582 TGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCGATGGCTGCGTCGATATCCGTCCCGT 104523 Query 23835 GTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAA 23894 | || || | ||| || | ||| | ||||| ||| || | ||| || || || || Sbjct 104522 GGATTCCCACGGCCACTCTCATGAGCATGTGTTGCGGCCGCTCAGCCACCTTGCTGTCAA 104463 Query 23895 TTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCAC 23954 | || | ||| || || || | || || || || || || ||| ||| || || | Sbjct 104462 TCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTC 104403 Query 23955 GATCGTGCACTATGGCCGAATTCAAACGGT 23984 |||| | ||||||||| || | |||| Sbjct 104402 TGTCGTAGATTATGGCCGAGTTGAGGCGGT 104373 >seq34 Length=1455329 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| |||||||||||| ||||| || ||||||||||| | || || ||| Sbjct 919597 ACCTCATCTTTGCTCGTGTACTCTACGATTTCTGTGCATAGATTGCTGGATTTGATGGTG 919656 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| ||| ||| ||||| || | ||||| | ||||||||| ||||| || ||||| Sbjct 919657 CCCAGATTTTGCTGATTGCTCTTCCTGTTGCAGGCATCCTTGTAAAGCATATATGGCGTA 919716 Query 23168 CCCGTCTCGACCTGCGACTCGATGAT 23193 || || || |||||| || ||||| Sbjct 919717 CCAGTTTCTGTCTGCGATTCAATGAT 919742 >seq33 Length=2144867 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || ||||| ||||| || || ||||| || |||||| | || ||||| | Sbjct 1213248 CAAAGATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGC 1213307 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| | || | || || | ||| |||||| ||||| | || || | Sbjct 1213308 CCAGCGACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATTCCCCCTG 1213367 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||| | || || ||||||||||| ||| ||||||| ||| || || | Sbjct 1213368 ACCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCTGACT 1213427 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | ||||| || || || || || || || ||||| || | |||||||| || Sbjct 1213428 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTTCTCCGTCTGAGGGGTGG 1213479 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || || || || || ||||| || |||||| | || ||||| || Sbjct 1190739 CATGCAGATCTTYGTGAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 1190798 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || ||| | || ||| ||||| ||| | || |||||||| Sbjct 1190799 TGACACCATTGAGAACGTGAAAGCTAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCA 1190858 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| ||||||| || || || || || Sbjct 1190859 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 1190918 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGG 31416 ||| || || || || || || || ||||| || | || ||||| Sbjct 1190919 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGTCTCAGGGG 1190963 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || ||||| || |||||| | || ||||| || | Sbjct 1190512 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 1190571 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | ||| |||||| |||||| | || ||||||||| Sbjct 1190572 GACACAATTGAAAATGTAAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCCGACCAG 1190631 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| | || || || || ||||| ||| ||||||| Sbjct 1190632 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGA 1190666 >seq913 Length=88738 Score = 86.0 bits (94), Expect = 6e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || ||||||||||| || || || ||||| || ||| |||||| || || || ||| || Sbjct 60854 GCTTTCGCCGCCGTGGAGGGGATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCTGGCTG 60913 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 ||||| | ||||||||||| |||||||| || ||||||| Sbjct 60914 AAGAAGAGGGGCCTGATGCCGGGCCTGACCTTCTCCAACGAG 60955 Score = 86.0 bits (94), Expect = 6e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || ||||||||||| || || || ||||| || ||| |||||| || || || ||| || Sbjct 73585 GCTTTCGCCGCCGTGGAGGGGATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCTGGCTG 73526 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 ||||| | ||||||||||| |||||||| || ||||||| Sbjct 73525 AAGAAGAGGGGCCTGATGCCGGGCCTGACCTTCTCCAACGAG 73484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445729418105040