Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1696 518 4e-142 seq34 98.7 1e-15 seq1698 84.2 3e-11 seq913 82.4 1e-10 >seq1696 Length=952724 Score = 518 bits (574), Expect = 4e-142 Identities = 1308/1981 (66%), Gaps = 33/1981 (2%) Strand=Plus/Minus Query 62294 CTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62353 |||||||||||| | | | || | | ||||| || || || |||| | | || Sbjct 105988 CTGAATGGATCCGCTGTGAGCAATCAGCTGGTTCTTCATGTCCTCGCTCCACAGTCCCCT 105929 Query 62354 CTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCT 62413 ||| || | || | || || || ||||| || | || || ||||| |||| || || Sbjct 105928 CTCCGTCAGGTCTTTGAGCAGGTGAGGGTTGACGATCTGAAACTCTCCTGACAGCACCCT 105869 Query 62414 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62473 || ||||| || || ||||| || | || | ||||| || || |||| || || || Sbjct 105868 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 105809 Query 62474 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62533 || || || || ||||| || |||| || | || || || | |||| | | || Sbjct 105808 GGTGGAGGCCGTTGGCATTGGAGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAC 105749 Query 62534 TTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG-------TACAACANNNNNNN 62586 || || || || | ||| | ||| || |||| || | | ||| Sbjct 105748 CTTCTCCTTCAGCGCCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTTCCACATGTCG-- 105691 Query 62587 NNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTT 62646 || || | || || |||||| | || ||| | || || || || || || | Sbjct 105690 -----TACTGGAAGATGCCCTTACTGACCGGGGAACCTTCGTACGTCTCGTAGGGGCCGT 105636 Query 62647 CCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCT 62706 | | |||| | |||||||||||| | ||| |||| |||||||| |||||||| | Sbjct 105635 GTTCGGCGGCTAACTCACAACTCGCCTCCAGAGCAGCGTAGTAAATGGTCTCAAAGATTT 105576 Query 62707 TCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGT 62766 | || || || || || ||||| |||||||||||| | || ||||| |||| Sbjct 105575 GGATGTTGAGCAGCTGAGCCTCAGGGCTTTCAAATGGATAACGCATCAGGATAAAGGCGT 105516 Query 62767 CCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTT 62826 | || |||||||| || ||||| || || || || || | | ||||||| | | || | Sbjct 105515 CAGCCAATCCTTGGACTCCAATTCCTATTGGCCTGTGGCGCATATTAGACCTCTTGGCCT 105456 Query 62827 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA 62886 || | || || || || || || ||||| || || | |||||||||||||||||| Sbjct 105455 CTTCCACTGGGTAGTAGTTTATGTCGATAATCTTGTTTAAGTTTCTGACAATTACTTTGG 105396 Query 62887 CCACATCCTTCAGTTTGAGAAAATCAAAT---CGCCCATCTATTACAAACATGTTCAATG 62943 |||| |||||| ||| ||| | ||| || | | || ||||||| | | Sbjct 105395 TCACAGATGCCAGTTTTTTAAAGTCATAAGTCCGCTCAGGTGTGACGTACATGTTGAGAG 105336 Query 62944 CAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTC 63001 | | || |||||||| || || || ||||| | | | | | |||| | || || Sbjct 105335 CGATGGAGGCCAGATTGCAGACAGCCACCTCGTC--CTTGCTGGTGTATTCGACGATTTC 105278 Query 63002 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63061 ||||| || || || |||||||| || || | ||| || || || ||||| |||| || Sbjct 105277 TGTGCAGAGGTTGCTGCACTTGATGGTCCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCA 105218 Query 63062 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63121 || || || || || ||| | || || |||||||| |||| || || || || || | Sbjct 105217 GGCRTCTTTGTACAGCATGTACGGCGTCCCAGTTTCTGTCTGTGACTCAATGATGGCGTA 105158 Query 63122 CCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTAT 63180 ||| | | || ||||||| | | | ||| |||| || | |||||| || | Sbjct 105157 CCACAGCTGCT-GAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCGTATCTGGTGT 105099 Query 63181 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACA 63240 | | || ||||| || ||||| | ||||| | || || || ||||||||| Sbjct 105098 AGAGCTCCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGGCCGGACACA 105039 Query 63241 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63300 ||| ||||| ||| | | || || ||| | ||||| ||||| ||||| ||||| || | Sbjct 105038 TCAGGGACCAGTCTTCATTATTCTCCACCCTCTTCATGAAGAGGTCAGGGATCCACAGGG 104979 Query 63301 C-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63359 | || ||| || || || | || || || || ||||| || ||||| || || || ||| Sbjct 104978 CGTAGAAA-AGGTCCCTCGCTCGCTGCTCTTCCTTTCCCGTGTTCTTCTTCAGCTCCAGG 104920 Query 63360 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63419 || | | | |||| ||||||| || |||| ||| ||||| | |||| || | |||| Sbjct 104919 AAGTCAAACACATCAAAATGCCAGGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTG 104860 Query 63420 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63479 || || ||||| || | ||| | || ||||| || || || |||| ||| || | | Sbjct 104859 TTGCCCCCCTGGTCGACGTAACGTGCAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGC 104800 Query 63480 CCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATT 63539 || || || || ||||| || | ||| |||| || | | | || || | Sbjct 104799 CCATTGGAGCAGCCGTTGGTGCCAGCGATGTAGCTCCCTGTTGATCTGATGCAGCTGACC 104740 Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63599 | || || ||||| || ||| ||| ||||| | |||||| | || | ||||| ||| Sbjct 104739 GCTACRCCGATTCCGCCGGCCGATTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTAG 104680 Query 63600 ATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63659 ||||| || ||||| || || |||| ||| || || |||||||||| || | | Sbjct 104679 ATGCCCTCGATGCTGTCGTCCTTCATTGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTG 104620 Query 63660 GTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63719 | ||||| ||||| || | ||| ||||| ||||| || ||||| || || || || || Sbjct 104619 TTGGTTCCAGCATTGAAGAGGGTTGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCAGG 104560 Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63779 ||||| ||||| || |||| ||| |||||| || ||||| || || || | ||| Sbjct 104559 TTGTAGGTCTCGATGGCTGCGTCGATATCCGTCCCGTGGATTCCCACGGCCACTCTCATG 104500 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 | |||||| || || | ||| | | ||| ||| || |||| || |||||| ||| Sbjct 104499 AGCATGTGTTGCGGCCGCTCAGCCACCTTGCTGTCAATCTTCAGCAGGTAGGAGCGCTCC 104440 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 63899 | ||| || || || || ||||||| || || |||| ||||| || || |||| ||| Sbjct 104439 AGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAGATTATGGCCGAGTTG 104380 Query 63900 AGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTTGAAATAATCGGAGAAT-- 63957 || ||||| | | | ||| | || | || | ||||| || || || | Sbjct 104379 AGGCGGTCCTTGTTTGCGAGAACAACCTCGAGCGTCTCTTTCGAAATCATGGGGGAGTGG 104320 Query 63958 -GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 64016 |||| || ||| || | ||||| | | |||||||| || || || || | | Sbjct 104319 CGTTT---GTTCAAAGGGTTGATGTAGTTATACAGGTCCTCCATGACATCGCTGAACACT 104263 Query 64017 ttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 || || || || ||||| || || || | ||| || | || || || ||||| || || Sbjct 104262 TTCTTCGTCTCTTTGTGCAGGTTGGAGACGGCGATGCGTGCAGCGAGGATGGCGTAGTCG 104203 Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136 || | || || || |||||| || || || || ||||| ||||| | || || || Sbjct 104202 GGGTATTTGGTGGTGAGAGTGGCAGCAATCTCTGCCGCCAGTGTGTCGAGCTCCACGGTG 104143 Query 64137 GTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGA 64196 || || || | || | || || || |||||||||| || | || || | | Sbjct 104142 GTGACCCCGCTGTACAAACCCTGGATCACCTTCATAGTGATCTGGGCTGGGTCAACAAAC 104083 Query 64197 TCCGTGTTTAAGCCATAGCACAATTTTCT-AATACGAGACGTGATTTTATCAAACATGAC 64255 ||| ||| | |||||||| || |||| |||||||| |||||||||||||||||||| Sbjct 104082 TCCAAGTTCAGCCCATAGCA-AAGCTTCTGGATACGAGAGGTGATTTTATCAAACATGAC 104024 Query 64256 A 64256 | Sbjct 104023 A 104023 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || || || ||||| || || || ||| || |||| || ||||| ||||| | Sbjct 106651 TCCAGCCATAGAAGTGCATGCTGGTAAGCTTGCCGTAGTTCGGCTCGGCTATGTGGATGT 106592 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||| || || || ||||||||||| || | ||| || ||||| || | | || | Sbjct 106591 TCAGAGACTGGCTCTGGTCGATGAAGGCGCCACGGTCAGCGGCCATCTTGAGTACTGTTT 106532 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62281 | || | || ||||| | ||||||||| | |||| | ||| ||||| Sbjct 106531 TCTGGGAGATCTCCCACACAGTTTTATACAGCTGCTTCAAATCATCTGG 106483 >seq34 Length=1455329 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || || ||||| | ||||||||||| || || ||||| || || || || | ||| Sbjct 923299 GTGCCAGCGTTAAACAGTGTAGGAGAAGCATGAGTGAACCACTTCTCTGACAGCAAGTTG 923358 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || |||||||| |||| || || || | || |||||| || |||| || | ||||| | Sbjct 923359 TAGGTCTCAATGGCTGCATCAATGTCTCCTTTATGAATCCCGACTGACACTCTCATTAGC 923418 Query 63783 ATGTGCTGAGGTCTTTCAACAA 63804 |||||||| ||||| ||| ||| Sbjct 923419 ATGTGCTGGGGTCTCTCAGCAA 923440 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 || || ||||| ||||| || | ||||| || || | |||||| ||||| ||||| || Sbjct 919624 ATTTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTGCTCTTCCTG 919683 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63115 || || |||||||| ||||| || |||| ||||||||||| |||| ||||| || || Sbjct 919684 TTGCAGGCATCCTTGTAAAGCATATATGGCGTACCAGTTTCTGTCTGCGATTCAATGAT 919742 >seq1698 Length=2458952 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||| || ||||| | ||||| || | || ||||| ||||||||||| | ||| | Sbjct 826487 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGTCCAGGCATTAGGCCCCTCTTCT 826428 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| | || | ||| ||||| || || ||||| || || || || || ||||| | Sbjct 826427 TTAACCAGTAGATAGCAGCAAATGAACCAGAGAAGAAAATGCCCTCCACAGCTGCAAAAG 826368 Query 33724 CAATAAGTCTCTCTCC 33739 | | || |||||| || Sbjct 826367 CCACAATTCTCTCCCC 826352 >seq913 Length=88738 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || ||||||| || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 60563 TACGTGTCGATCAGCAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAAA 60504 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||||||||||| | ||||| || | ||||||||| Sbjct 60503 CCGTAGAAACACCGGGCCTCCGTCACCTGCACTTC 60469 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || ||||||| || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 73876 TACGTGTCGATCAGCAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAAA 73935 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||||||||||| | ||||| || | ||||||||| Sbjct 73936 CCGTAGAAACACCGGGCCTCCGTCACCTGCACTTC 73970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629765348757360