Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1696 563 1e-155 seq34 98.7 1e-15 seq1698 96.9 5e-15 >seq1696 Length=952724 Score = 563 bits (624), Expect = 1e-155 Identities = 1315/1975 (67%), Gaps = 21/1975 (1%) Strand=Plus/Minus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 |||||||||||| | | || || | | ||||| || || || |||| | | || Sbjct 105988 CTGAATGGATCCGCTGTGAGCAATCAGCTGGTTCTTCATGTCCTCGCTCCACAGTCCCCT 105929 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 ||| || | || | || || || || || || | ||||| ||||| |||| || || Sbjct 105928 CTCCGTCAGGTCTTTGAGCAGGTGAGGGTTGACGATCTGAAACTCTCCTGACAGCACCCT 105869 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || ||||| || || ||||| || | || | ||||| || || |||| || || || Sbjct 105868 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 105809 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326 || || || || ||||| || |||| || | || || || | |||| | | || Sbjct 105808 GGTGGAGGCCGTTGGCATTGGAGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAC 105749 Query 65327 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTA-CAACNNNNNNNNNNNNNN 65385 || || || || | | ||| | ||| || |||| || | | Sbjct 105748 CTTCTCCTTCAGCGCCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTTCCACATGTCGTA 105689 Query 65386 NTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCT 65445 | | ||| | || |||||| | || ||| | || || ||||| || || | | Sbjct 105688 CTGGAAGA-TGCCCTTACTGACCGGGGAACCTTCGTACGTCTCGTAGGGGCCGTGTTCGG 105630 Query 65446 CAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTAT 65505 | |||| |||||||||||||| | ||| |||| |||||||| || ||||| | | | Sbjct 105629 CGGCTAACTCACAACTCGCCTCCAGAGCAGCGTAGTAAATGGTCTCAAAGATTTGGATGT 105570 Query 65506 TTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 65565 | || || || || |||| |||||||||||| | || ||||| ||||| || | Sbjct 105569 TGAGCAGCTGAGCCTCAGGGCTTTCAAATGGATAACGCATCAGGATAAAGGCGTCAGCCA 105510 Query 65566 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAA 65625 ||||||| || ||||| || || || || || | | ||||||| | | || ||| | Sbjct 105509 ATCCTTGGACTCCAATTCCTATTGGCCTGTGGCGCATATTAGACCTCTTGGCCTCTTCCA 105450 Query 65626 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACAT 65685 || || || || || || ||||| || || | |||||||||||||||||| |||| Sbjct 105449 CTGGGTAGTAGTTTATGTCGATAATCTTGTTTAAGTTTCTGACAATTACTTTGGTCACAG 105390 Query 65686 CCTTCAGTTTGAGAAAATCAAAT---CGCTCATCTATTACAAACATGTTCAATGCAACAG 65742 |||||| ||| ||| | |||||| | | || ||||||| | || | | Sbjct 105389 ATGCCAGTTTTTTAAAGTCATAAGTCCGCTCAGGTGTGACGTACATGTTGAGAGCGATGG 105330 Query 65743 ATGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGCA 65800 | |||||||| || || || ||||| | | | | | |||| | || || ||||| Sbjct 105329 AGGCCAGATTGCAGACAGCCACCTCGTC--CTTGCTGGTGTATTCGACGATTTCTGTGCA 105272 Query 65801 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 65860 || || || ||||||||||| || | ||| || || || ||||| |||| || || || Sbjct 105271 GAGGTTGCTGCACTTGATGGTCCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTC 105212 Query 65861 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 65919 || || || ||| | || || |||||||| |||| || || || || || | ||| | Sbjct 105211 TTTGTACAGCATGTACGGCGTCCCAGTTTCTGTCTGTGACTCAATGATGGCGTACCACAG 105152 Query 65920 CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATC 65979 | || ||||||| | | | ||| ||| || | |||||| || || | Sbjct 105151 CTGCT-GAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCGTATCTGGTGTAGAGCT 105093 Query 65980 GTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 66039 || ||||| || ||||| | ||||| || || || || |||||||||||| | Sbjct 105092 CCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGGCCGGACACATCAGGG 105033 Query 66040 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATA 66098 |||| ||| | | || || ||| | ||||| ||||| ||||| ||||| || || || | Sbjct 105032 ACCAGTCTTCATTATTCTCCACCCTCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGA 104973 Query 66099 AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 66158 || | || || | || || || || ||||| || ||||| || || || ||||| | Sbjct 104972 AA-AGGTCCCTCGCTCGCTGCTCTTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCA 104914 Query 66159 ATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 66218 | | |||| ||||||| || |||| ||| ||||| | |||| || | |||||| || Sbjct 104913 AACACATCAAAATGCCAGGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCC 104854 Query 66219 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 66278 ||||| || | ||| | || ||||| || || || |||| ||| || | | |||||| Sbjct 104853 CCCTGGTCGACGTAACGTGCAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGCCCATTG 104794 Query 66279 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGA 66338 || || ||||| || | ||| ||||| || ||| | || || | | || Sbjct 104793 GAGCAGCCGTTGGTGCCAGCGATGTAGCTCCCTGTTGATCTGATGCAGCTGACCGCTACR 104734 Query 66339 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 66398 || ||||| || ||| ||| ||||| | |||||| | || | || || ||||||||| Sbjct 104733 CCGATTCCGCCGGCCGATTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTAGATGCCC 104674 Query 66399 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 66458 || || || || ||| |||| ||| || || |||||||||| || | | | ||| Sbjct 104673 TCGATGCTGTCGTCCTTCATTGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGGTT 104614 Query 66459 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 66518 || ||||| || | ||| ||||| ||||| || ||||| || || || || || ||||| Sbjct 104613 CCAGCATTGAAGAGGGTTGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAG 104554 Query 66519 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 66578 ||||| || |||| ||| |||||| || ||||| || || || | ||| | |||| Sbjct 104553 GTCTCGATGGCTGCGTCGATATCCGTCCCGTGGATTCCCACGGCCACTCTCATGAGCATG 104494 Query 66579 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 66638 || || || | ||| | | |||| ||| || |||| || |||||| |||| ||| Sbjct 104493 TGTTGCGGCCGCTCAGCCACCTTGCTGTCAATCTTCAGCAGGTAGGAGCGCTCCAGAGTC 104434 Query 66639 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 66698 || || || || ||||||| || || |||| ||||| || || |||||||||| Sbjct 104433 TTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAGATTATGGCCGAGTTGAGGCGG 104374 Query 66699 TCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAAT---GTTTC 66755 ||||| | | | ||| || || | || | ||||| || || || | |||| Sbjct 104373 TCCTTGTTTGCGAGAACAACCTCGAGCGTCTCTTTCGAAATCATGGGGGAGTGGCGTTT- 104315 Query 66756 CCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 66815 || ||| |||| ||||| | | |||||||| || || || || | ||| || Sbjct 104314 --GTTCAAAGGGTTGATGTAGTTATACAGGTCCTCCATGACATCGCTGAACACTTTCTTC 104257 Query 66816 GTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGT 66875 || |||||||| || || || ||||| || | || || | ||||| || || || | | Sbjct 104256 GTCTCTTTGTGCAGGTTGGAGACGGCGATGCGTGCAGCGAGGATGGCGTAGTCGGGGTAT 104197 Query 66876 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 66935 | || || |||||| || || || || ||||| ||||| | || || || || || Sbjct 104196 TTGGTGGTGAGAGTGGCAGCAATCTCTGCCGCCAGTGTGTCGAGCTCCACGGTGGTGACC 104137 Query 66936 CCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTG 66995 || | || | || ||||| |||||||||| || | || || | | || | Sbjct 104136 CCGCTGTACAAACCCTGGATCACCTTCATAGTGATCTGGGCTGGGTCAACAAACTCCAAG 104077 Query 66996 TTTAAGCCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGACA 67049 || | ||||| || || |||| |||||||| ||||||||||||||||||||| Sbjct 104076 TTCAGCCCATAGCA-AAGCTTCTGGATACGAGAGGTGATTTTATCAAACATGACA 104023 Score = 89.7 bits (98), Expect = 7e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || ||||| || || || ||| || |||| || ||||| ||||| | Sbjct 106651 TCCAGCCATAGAAGTGCATGCTGGTAAGCTTGCCGTAGTTCGGCTCGGCTATGTGGATGT 106592 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| ||| || || || ||||||||||| || | ||| || ||||| || | | || | Sbjct 106591 TCAGAGACTGGCTCTGGTCGATGAAGGCGCCACGGTCAGCGGCCATCTTGAGTACTGTTT 106532 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 65074 | || | || ||||| | ||||||||| | |||| | ||| ||||| Sbjct 106531 TCTGGGAGATCTCCCACACAGTTTTATACAGCTGCTTCAAATCATCTGG 106483 >seq34 Length=1455329 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 65790 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 65849 || || ||||| ||||| || | |||||||| || | |||||| ||||| ||||| || Sbjct 919624 ATTTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTGCTCTTCCTG 919683 Query 65850 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 65908 || || |||||||| ||||| || |||| ||||||||||| |||| ||||| || || Sbjct 919684 TTGCAGGCATCCTTGTAAAGCATATATGGCGTACCAGTTTCTGTCTGCGATTCAATGAT 919742 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || || ||||| | ||||||||||| || || ||||| || || || || | ||| Sbjct 923299 GTGCCAGCGTTAAACAGTGTAGGAGAAGCATGAGTGAACCACTTCTCTGACAGCAAGTTG 923358 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || |||||||| |||| || || || | || |||||| || |||| || | ||||| | Sbjct 923359 TAGGTCTCAATGGCTGCATCAATGTCTCCTTTATGAATCCCGACTGACACTCTCATTAGC 923418 Query 66576 ATGTGCTGAGGTCTTTCA 66593 |||||||| ||||| ||| Sbjct 923419 ATGTGCTGGGGTCTCTCA 923436 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || || |||||||| || || || || || || | || || | Sbjct 924832 CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCAATGCGTGCAGCCAGGC 924891 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | ||||| || ||||||| || || ||||| || | || |||||||||||||| | Sbjct 924892 TTGCATAGTCTGGATGTTTAGTGGTGAGGGTGGCAGCAGTCTCTGCTGCCAGAGTGTCTA 924951 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 || || || || |||||||| || | || ||||| |||||||| Sbjct 924952 GCTCCACTGTGGTGACTCCATTGTACAGACCCTGGATCACCTTCAT 924997 >seq1698 Length=2458952 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 ||||||| || ||||| | |||||||| | || ||||| ||||||||||| | ||| | Sbjct 826487 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGTCCAGGCATTAGGCCCCTCTTCT 826428 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| | || | |||||||| ||||| |||||||| || || || || ||||| | Sbjct 826427 TTAACCAGTAGATAGCAGCAAATGAACCAGAGAAGAAAATGCCCTCCACAGCTGCAAAAG 826368 Query 36300 CAATAAGTCTCTCTCC 36315 | | || |||||| || Sbjct 826367 CCACAATTCTCTCCCC 826352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658118196339080