Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1696 581 5e-161 seq1698 102 1e-16 seq34 96.9 5e-15 >seq1696 Length=952724 Score = 581 bits (644), Expect = 5e-161 Identities = 1322/1975 (67%), Gaps = 21/1975 (1%) Strand=Plus/Minus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 |||||||||||| | | || || | | ||||| || || || |||| | | || Sbjct 105988 CTGAATGGATCCGCTGTGAGCAATCAGCTGGTTCTTCATGTCCTCGCTCCACAGTCCCCT 105929 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 ||| || | || | || || || || || || | ||||| ||||| |||| || || Sbjct 105928 CTCCGTCAGGTCTTTGAGCAGGTGAGGGTTGACGATCTGAAACTCTCCTGACAGCACCCT 105869 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || ||||| || || ||||| || | || | || || || || |||| || || || Sbjct 105868 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 105809 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 || || ||||||||||| || |||| || | || || || | |||| | || Sbjct 105808 GGTGGAGGCCGTTGGCATTGGAGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAC 105749 Query 79206 TTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGG-GACAACATTCCAAAGATCAT 79264 || || || || | | ||| ||||| || || | || | | | ||||| | || | Sbjct 105748 CTTCTCCTTCAGCGCCTTCCAGTCCCACAGGTCCGTTGGCGTCTTC-TTCCACATGTCGT 105690 Query 79265 ATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTT 79324 | || | || || ||||| | || ||| ||| || || || || || | | Sbjct 105689 ACTGGAAGATGCCCTTACTGACCGGGGAACCTTCGTACGTCTCGTAGGGGCCGTGTTCGG 105630 Query 79325 CGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTAT 79384 ||||||| |||||||||||||| | || |||| |||||||| || || || | | | Sbjct 105629 CGGCTAACTCACAACTCGCCTCCAGAGCAGCGTAGTAAATGGTCTCAAAGATTTGGATGT 105570 Query 79385 TGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 79444 |||| || || || |||| |||||||||||| | || ||||| ||||| || | Sbjct 105569 TGAGCAGCTGAGCCTCAGGGCTTTCAAATGGATAACGCATCAGGATAAAGGCGTCAGCCA 105510 Query 79445 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAA 79504 ||||||| || ||||| || || || || || | | ||||||| | | || ||| | Sbjct 105509 ATCCTTGGACTCCAATTCCTATTGGCCTGTGGCGCATATTAGACCTCTTGGCCTCTTCCA 105450 Query 79505 TAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACAT 79564 || || || || || || ||||| || || | || ||||| ||||||||| |||| Sbjct 105449 CTGGGTAGTAGTTTATGTCGATAATCTTGTTTAAGTTTCTGACAATTACTTTGGTCACAG 105390 Query 79565 CCTTTAGTTTGAGAAAATCAAAT---CGTCCATCTATTACAAACATGTTCAACGCGACAG 79621 ||||| ||| ||| | || || | | || ||||||| | |||| | Sbjct 105389 ATGCCAGTTTTTTAAAGTCATAAGTCCGCTCAGGTGTGACGTACATGTTGAGAGCGATGG 105330 Query 79622 ATGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATTTCAGTGCA 79679 | |||||||| || || || ||||| | | | | | |||| | ||||| ||||| Sbjct 105329 AGGCCAGATTGCAGACAGCCACCTCGTC--CTTGCTGGTGTATTCGACGATTTCTGTGCA 105272 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 |||||| || ||||| ||||| || | ||| || || || ||||| |||| || || || Sbjct 105271 GAGGTTGCTGCACTTGATGGTCCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTC 105212 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 79798 || || || ||| |||| || |||||||| |||| || || || || || | ||| | Sbjct 105211 TTTGTACAGCATGTACGGCGTCCCAGTTTCTGTCTGTGACTCAATGATGGCGTACCACAG 105152 Query 79799 CGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATC 79858 | || ||||||| | | | |||| ||| || | |||||| || || | Sbjct 105151 CTGCT-GAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCGTATCTGGTGTAGAGCT 105093 Query 79859 GTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACG 79918 || ||||| || ||||| ||||| | || || || ||| | |||||||||| | Sbjct 105092 CCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGGCCGGACACATCAGGG 105033 Query 79919 ACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATA 79977 |||| ||| ||| || || || | ||||| ||||| ||||| ||||| || || || | Sbjct 105032 ACCAGTCTTCATTATTCTCCACCCTCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGA 104973 Query 79978 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 80037 || || || || | || ||||| || ||||| || ||||| || || || ||||| | Sbjct 104972 AA-AGGTCCCTCGCTCGCTGCTCTTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCA 104914 Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCT 80097 | | |||| ||||||| || |||| ||| ||||| | |||| |||| |||||| || Sbjct 104913 AACACATCAAAATGCCAGGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCC 104854 Query 80098 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 80157 ||||| || | ||| | || ||||| || || || |||| ||| || | | |||||| Sbjct 104853 CCCTGGTCGACGTAACGTGCAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGCCCATTG 104794 Query 80158 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 80217 || || ||||| || | ||| ||||| || | | | || || | | || Sbjct 104793 GAGCAGCCGTTGGTGCCAGCGATGTAGCTCCCTGTTGATCTGATGCAGCTGACCGCTACR 104734 Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || ||||| || ||| ||| ||||| | |||||| | || | || || ||||||||| Sbjct 104733 CCGATTCCGCCGGCCGATTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTAGATGCCC 104674 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 80337 || ||||| || || |||| ||| || || |||||||||| || | | | ||| Sbjct 104673 TCGATGCTGTCGTCCTTCATTGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGGTT 104614 Query 80338 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 80397 || ||||| || | ||| ||||| ||||| || ||||| || || ||||| || ||||| Sbjct 104613 CCAGCATTGAAGAGGGTTGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAG 104554 Query 80398 GTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATG 80457 ||||| || |||| || |||||| || ||||| || || || | ||| | |||| Sbjct 104553 GTCTCGATGGCTGCGTCGATATCCGTCCCGTGGATTCCCACGGCCACTCTCATGAGCATG 104494 Query 80458 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTT 80517 || || || | ||| | | |||| | | || |||| || ||| || |||| ||| Sbjct 104493 TGTTGCGGCCGCTCAGCCACCTTGCTGTCAATCTTCAGCAGGTAGGAGCGCTCCAGAGTC 104434 Query 80518 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 80577 || || || || ||||||| || || |||| ||||| || || |||||||||| Sbjct 104433 TTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAGATTATGGCCGAGTTGAGGCGG 104374 Query 80578 TCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAAT---GTTTC 80634 ||||| | | | ||| || || | || | ||||| || || || | |||| Sbjct 104373 TCCTTGTTTGCGAGAACAACCTCGAGCGTCTCTTTCGAAATCATGGGGGAGTGGCGTTT- 104315 Query 80635 CCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 80694 || ||| || | ||||| | | |||||||| || || || || | ||| || Sbjct 104314 --GTTCAAAGGGTTGATGTAGTTATACAGGTCCTCCATGACATCGCTGAACACTTTCTTC 104257 Query 80695 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGT 80754 || || ||||| || || || ||||| || | || || | ||||| || || || | | Sbjct 104256 GTCTCTTTGTGCAGGTTGGAGACGGCGATGCGTGCAGCGAGGATGGCGTAGTCGGGGTAT 104197 Query 80755 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 80814 | || || |||||| || || || || ||||| ||||| | || || || || || Sbjct 104196 TTGGTGGTGAGAGTGGCAGCAATCTCTGCCGCCAGTGTGTCGAGCTCCACGGTGGTGACC 104137 Query 80815 CCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTG 80874 || | || | || ||||| |||||||||| || | || || | | || | Sbjct 104136 CCGCTGTACAAACCCTGGATCACCTTCATAGTGATCTGGGCTGGGTCAACAAACTCCAAG 104077 Query 80875 TTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATGACA 80928 || | ||||| || || |||| |||||||| ||||||||||||||||||||| Sbjct 104076 TTCAGCCCATAGCA-AAGCTTCTGGATACGAGAGGTGATTTTATCAAACATGACA 104023 Score = 93.3 bits (102), Expect = 6e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| ||||| || || || ||| || |||| || ||||| ||||| | Sbjct 106651 TCCAGCCATAGAAGTGCATGCTGGTAAGCTTGCCGTAGTTCGGCTCGGCTATGTGGATGT 106592 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| ||| || || || ||||||||||| || | ||| || ||||| || | | || | Sbjct 106591 TCAGAGACTGGCTCTGGTCGATGAAGGCGCCACGGTCAGCGGCCATCTTGAGTACTGTTT 106532 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 | || | || ||||| | ||||||||| | |||| | ||| ||||| Sbjct 106531 TCTGGGAGATCTCCCACACAGTTTTATACAGCTGCTTCAAATCATCTGG 106483 >seq1698 Length=2458952 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||| || ||||| || |||||||| | || ||||| ||||||||||| | ||| | Sbjct 826487 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGTCCAGGCATTAGGCCCCTCTTCT 826428 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| | || | |||||||| ||||| ||||| || || || || || ||||| | Sbjct 826427 TTAACCAGTAGATAGCAGCAAATGAACCAGAGAAGAAAATGCCCTCCACAGCTGCAAAAG 826368 Query 50102 CAACAAGTCTCTCTCC 50117 | |||| |||||| || Sbjct 826367 CCACAATTCTCTCCCC 826352 >seq34 Length=1455329 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || || ||||| | ||||||||||| || || ||||| || || ||||| | ||| Sbjct 923299 GTGCCAGCGTTAAACAGTGTAGGAGAAGCATGAGTGAACCACTTCTCTGACAGCAAGTTG 923358 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || |||||||| |||| || || || | || |||||| || || | || | ||||| | Sbjct 923359 TAGGTCTCAATGGCTGCATCAATGTCTCCTTTATGAATCCCGACTGACACTCTCATTAGC 923418 Query 80455 ATGTGCTGAGGTCTTTCA 80472 |||||||| ||||| ||| Sbjct 923419 ATGTGCTGGGGTCTCTCA 923436 Score = 93.3 bits (102), Expect = 6e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 79291 GATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAAT 79350 ||||||| ||| ||||||||||| || || | || | ||||||||| ||||| | Sbjct 919038 GATCCTGAGTAGGTTTCATAAGGGCCGAGCTCTGATGCCAGTTCACAACTGGCCTCCAGG 919097 Query 79351 GCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCA 79410 || | ||||| ||||| || || |||| | ||||| || || ||| |||| ||| Sbjct 919098 GCAGCATAATAGATGGTCTCAAAGATCTGAATGTTGAGCAACTGGGCCTCTGGGCTTTCA 919157 Query 79411 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 79470 ||||| || | || ||||| || || || | || || |||||||| || || || Sbjct 919158 AATGGGTAGCGCATAAGGATAAAGGCATCAGCCAGACCCTGCACACCAATTCCAATTGGC 919217 Query 79471 CTATGTCTCTTATTAGAAATTTCAGC 79496 || || | || ||||| ||||||| Sbjct 919218 CTGTGACGTTTGTTAGACCTTTCAGC 919243 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 ||||| ||||| || || || | || ||||| || | |||||| ||||| ||||| || Sbjct 919624 ATTTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTGCTCTTCCTG 919683 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 79787 || || |||||||| ||||| || | || ||||||||||| |||| ||||| || || Sbjct 919684 TTGCAGGCATCCTTGTAAAGCATATATGGCGTACCAGTTTCTGTCTGCGATTCAATGAT 919742 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| |||| ||| || || || ||||| || || || || || || | || || | Sbjct 924832 CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCAATGCGTGCAGCCAGGC 924891 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | ||||| |||||||||| || || ||||| || | || |||||||||||||| | Sbjct 924892 TTGCATAGTCTGGATGTTTAGTGGTGAGGGTGGCAGCAGTCTCTGCTGCCAGAGTGTCTA 924951 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || || || || |||||||| || | || ||||| |||||||| Sbjct 924952 GCTCCACTGTGGTGACTCCATTGTACAGACCCTGGATCACCTTCAT 924997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718209210624680