Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1696 549 3e-151 seq34 102 1e-16 seq1698 93.3 6e-14 >seq1696 Length=952724 Score = 549 bits (608), Expect = 3e-151 Identities = 1322/1992 (66%), Gaps = 23/1992 (1%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 |||||||||||| | | ||||| | | || || || || || |||| | | || Sbjct 105988 CTGAATGGATCCGCTGTGAGCAATCAGCTGGTTCTTCATGTCCTCGCTCCACAGTCCCCT 105929 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || | || | || || ||||| || || | ||||| ||||| |||| || || Sbjct 105928 CTCCGTCAGGTCTTTGAGCAGGTGAGGGTTGACGATCTGAAACTCTCCTGACAGCACCCT 105869 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| || | || | ||||| || || |||| || || || Sbjct 105868 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 105809 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 || || || || ||||| || |||| || || || || || | || ||| || Sbjct 105808 GGTGGAGGCCGTTGGCATTGGAGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAC 105749 Query 71289 TTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNN 71348 || || || || | | ||| | ||| || |||| ||| Sbjct 105748 CTTCTCCTTCAGCGCCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTTCCACATGTCGTA 105689 Query 71349 NNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTC 71408 ||||| ||||| | || ||| | || || ||||| || || | || | Sbjct 105688 CTGGAAGATGCCCTTACTGACCGGGGAACCTTCGTACGTCTCGTAGGGGCCGTGTTCGGC 105629 Query 71409 GGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATT 71468 ||||| |||||||||||||| | || | || |||||||| || || || | | || Sbjct 105628 GGCTAACTCACAACTCGCCTCCAGAGCAGCGTAGTAAATGGTCTCAAAGATTTGGATGTT 105569 Query 71469 GAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 71528 ||| || || || ||||| |||||||||||| | || ||||| ||||| || || Sbjct 105568 GAGCAGCTGAGCCTCAGGGCTTTCAAATGGATAACGCATCAGGATAAAGGCGTCAGCCAA 105509 Query 71529 TCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAAT 71588 |||||| || ||||| || || || ||||| | | ||||||| | | || ||| | Sbjct 105508 TCCTTGGACTCCAATTCCTATTGGCCTGTGGCGCATATTAGACCTCTTGGCCTCTTCCAC 105449 Query 71589 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATC 71648 || || || || || || ||||| || || | |||||||| ||||||||| |||| Sbjct 105448 TGGGTAGTAGTTTATGTCGATAATCTTGTTTAAGTTTCTGACAATTACTTTGGTCACAGA 105389 Query 71649 CTTTAGTTTGAGAAAATCAAATCTCCCATC---TATTACAAACACGTTCAAGGCAACAGA 71705 ||||| ||| ||| | ||| || | | || ||| ||| | || | || Sbjct 105388 TGCCAGTTTTTTAAAGTCATAAGTCCGCTCAGGTGTGACGTACATGTTGAGAGCGATGGA 105329 Query 71706 TGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 |||||||| || || || ||||| | | || || |||| | ||||| ||||| Sbjct 105328 GGCCAGATTGCAGACAGCCACCTCGTCCTTGCT--GGTGTATTCGACGATTTCTGTGCAG 105271 Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823 || || || ||||||||||| || | ||| || || || ||||| |||| || || || Sbjct 105270 AGGTTGCTGCACTTGATGGTCCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTCT 105211 Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-C 71882 || || || || |||| || |||||||| |||| || || || || || | ||| | | Sbjct 105210 TTGTACAGCATGTACGGCGTCCCAGTTTCTGTCTGTGACTCAATGATGGCGTACCACAGC 105151 Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCG 71942 || ||||||| | | | |||| ||| || | |||||| || || | Sbjct 105150 TGCT-GAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCGTATCTGGTGTAGAGCTC 105092 Query 71943 TTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATG 72001 || ||||| || ||||| ||| | ||| | || || || || ||||||||||| | Sbjct 105091 CTCAAACTCCTCCCCCCA-GCACTCGTCCAGCCCGGGGCAGTCGGCCGGACACATCAGGG 105033 Query 72002 ACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATA 72060 |||| ||| ||| || | || | ||||| ||||| ||||| ||||| || || || | Sbjct 105032 ACCAGTCTTCATTATTCTCCACCCTCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGA 104973 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 || || || || | || ||||| || ||||| || ||||| || || || ||||| | Sbjct 104972 AA-AGGTCCCTCGCTCGCTGCTCTTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCA 104914 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | | |||| ||||||| || |||| ||| ||||| | |||| || | |||||| || Sbjct 104913 AACACATCAAAATGCCAGGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCC 104854 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 ||||| || | ||| | || ||||| || || || |||| ||| || | | |||||| Sbjct 104853 CCCTGGTCGACGTAACGTGCAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGCCCATTG 104794 Query 72241 GATGCA-CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAG 72299 || ||| || ||||| || | ||| ||||| || | | | || ||| | | || Sbjct 104793 GA-GCAGCCGTTGGTGCCAGCGATGTAGCTCCCTGTTGATCTGATGCAGCTGACCGCTAC 104735 Query 72300 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 72359 || ||||| || ||| ||| ||||| | |||||| | || | || || |||||||| Sbjct 104734 RCCGATTCCGCCGGCCGATTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTAGATGCC 104675 Query 72360 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419 ||| || || || ||| |||| ||| || || |||||||||| || | | | || Sbjct 104674 CTCGATGCTGTCGTCCTTCATTGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGGT 104615 Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479 ||| ||||| || | ||| ||||| ||||| || ||||| || || ||||| || ||||| Sbjct 104614 TCCAGCATTGAAGAGGGTTGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTA 104555 Query 72480 CGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539 ||||| || |||| || |||||| || ||||| || || || | ||| | ||| Sbjct 104554 GGTCTCGATGGCTGCGTCGATATCCGTCCCGTGGATTCCCACGGCCACTCTCATGAGCAT 104495 Query 72540 ATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 || || || | ||| | | |||| | | || |||| || |||||| |||| ||| Sbjct 104494 GTGTTGCGGCCGCTCAGCCACCTTGCTGTCAATCTTCAGCAGGTAGGAGCGCTCCAGAGT 104435 Query 72600 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTT 72659 || || || || ||||||| || || |||| ||||| || || |||| ||||| Sbjct 104434 CTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAGATTATGGCCGAGTTGAGGCG 104375 Query 72660 ATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAAT---GTTT 72716 ||||| | | | ||| | || | || | ||||| || || || | |||| Sbjct 104374 GTCCTTGTTTGCGAGAACAACCTCGAGCGTCTCTTTCGAAATCATGGGGGAGTGGCGTTT 104315 Query 72717 CCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 72776 || ||| || | ||||| | | |||||||| || || || || | ||| || Sbjct 104314 ---GTTCAAAGGGTTGATGTAGTTATACAGGTCCTCCATGACATCGCTGAACACTTTCTT 104258 Query 72777 tGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 || || ||||| || || || ||||| || | || || || ||||| || || || | Sbjct 104257 CGTCTCTTTGTGCAGGTTGGAGACGGCGATGCGTGCAGCGAGGATGGCGTAGTCGGGGTA 104198 Query 72837 TTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 72896 || || || |||||| || || ||||| ||||| ||||| | || || || || || Sbjct 104197 TTTGGTGGTGAGAGTGGCAGCAATCTCTGCCGCCAGTGTGTCGAGCTCCACGGTGGTGAC 104138 Query 72897 TCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGT 72956 || | || | || ||||| |||||||||| || | || || | | || Sbjct 104137 CCCGCTGTACAAACCCTGGATCACCTTCATAGTGATCTGGGCTGGGTCAACAAACTCCAA 104078 Query 72957 GTTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATAACATTTT 73015 ||| | ||||| || || |||| |||||||| ||||||||||||||||| ||| | Sbjct 104077 GTTCAGCCCATAGCA-AAGCTTCTGGATACGAGAGGTGATTTTATCAAACATGACACGCT 104019 Query 73016 CCCGGCATCCAT 73027 | ||| ||||| Sbjct 104018 CTTGGCGTCCAT 104007 Score = 93.3 bits (102), Expect = 6e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || || ||||| || || || ||| ||| | || ||||||||||| || | Sbjct 106651 TCCAGCCATAGAAGTGCATGCTGGTAAGCTTGCCGTAGTTCGGCTCGGCTATGTGGATGT 106592 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| || || ||||||||||| || | ||| || ||||| || | | || | Sbjct 106591 TCAGAGACTGGCTCTGGTCGATGAAGGCGCCACGGTCAGCGGCCATCTTGAGTACTGTTT 106532 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | || | || ||||| | ||||||||| | |||| | ||| ||||| Sbjct 106531 TCTGGGAGATCTCCCACACAGTTTTATACAGCTGCTTCAAATCATCTGG 106483 >seq34 Length=1455329 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 71752 ATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 71811 ||||| ||||| ||||| || | |||||||| || | |||||| ||||| ||||| || Sbjct 919624 ATTTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTGCTCTTCCTG 919683 Query 71812 TTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 71870 || || |||||||| ||||| ||| | || ||||||||||| |||| ||||| || || Sbjct 919684 TTGCAGGCATCCTTGTAAAGCATATATGGCGTACCAGTTTCTGTCTGCGATTCAATGAT 919742 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| |||| ||| || || || ||||| || || || || || || | || || || Sbjct 924832 CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCAATGCGTGCAGCCAGGC 924891 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | ||||| |||||||||| || || ||||| || | ||||||||||||||||| | Sbjct 924892 TTGCATAGTCTGGATGTTTAGTGGTGAGGGTGGCAGCAGTCTCTGCTGCCAGAGTGTCTA 924951 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || |||||||| || | || ||||| |||||||| Sbjct 924952 GCTCCACTGTGGTGACTCCATTGTACAGACCCTGGATCACCTTCAT 924997 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || || ||||| | ||||||||||| || || ||||| || || ||||| | ||| Sbjct 923299 GTGCCAGCGTTAAACAGTGTAGGAGAAGCATGAGTGAACCACTTCTCTGACAGCAAGTTG 923358 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || |||||||| |||| || || || | || ||| || || || | || | ||||| | Sbjct 923359 TAGGTCTCAATGGCTGCATCAATGTCTCCTTTATGAATCCCGACTGACACTCTCATTAGC 923418 Query 72538 ATATGCTGAGGTCTTTCA 72555 || ||||| ||||| ||| Sbjct 923419 ATGTGCTGGGGTCTCTCA 923436 >seq1698 Length=2458952 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| || || ||||| | |||||||| | || ||||| ||||||||||| | ||| | Sbjct 826487 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGTCCAGGCATTAGGCCCCTCTTCT 826428 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| | |||| |||||||| ||||| ||||| || || || || || ||||| | Sbjct 826427 TTAACCAGTAGATAGCAGCAAATGAACCAGAGAAGAAAATGCCCTCCACAGCTGCAAAAG 826368 Query 42207 CAATAAGTCTCTCTCC 42222 | | || |||||| || Sbjct 826367 CCACAATTCTCTCCCC 826352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671083520614120