Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq913 91.5 2e-13 >seq913 Length=88738 Score = 91.5 bits (100), Expect = 2e-13 Identities = 96/126 (76%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 125068 AGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG 125127 |||| |||||||||||||||||| | | |||||||| | ||| || ||||| Sbjct 60246 AGGTGGATCTGTCCAAGGACCTGCAACACTGGGAGACCC---TGAAGGACGAAGAGCGCT 60302 Query 125128 AGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC 125187 | || || || ||| | |||||||||||||||| | |||||| ||||||||||| || | Sbjct 60303 ACTTCATCTCCCACGTGTTGGCCTTCTTTGCCGCCAGCGATGGCATCGTCAACGAGAACC 60362 Query 125188 TGTTGA 125193 || ||| Sbjct 60363 TGGTGA 60368 Score = 91.5 bits (100), Expect = 2e-13 Identities = 96/126 (76%), Gaps = 3/126 (2%) Strand=Plus/Minus Query 125068 AGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG 125127 |||| |||||||||||||||||| | | |||||||| | ||| || ||||| Sbjct 74193 AGGTGGATCTGTCCAAGGACCTGCAACACTGGGAGACCC---TGAAGGACGAAGAGCGCT 74137 Query 125128 AGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC 125187 | || || || ||| | |||||||||||||||| | |||||| ||||||||||| || | Sbjct 74136 ACTTCATCTCCCACGTGTTGGCCTTCTTTGCCGCCAGCGATGGCATCGTCAACGAGAACC 74077 Query 125188 TGTTGA 125193 || ||| Sbjct 74076 TGGTGA 74071 Score = 89.7 bits (98), Expect = 8e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 ||||||| ||||||||||| ||||| |||||||| || || ||||| |||||||| | Sbjct 60849 TGGTGGCTTTCGCCGCCGTGGAGGGGATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCT 60908 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||| |||||| | || || ||||| || ||||| Sbjct 60909 GGCTGAAGAAGAGGGGCCTGATGCCGGGCCTGAC 60942 Score = 89.7 bits (98), Expect = 8e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 ||||||| ||||||||||| ||||| |||||||| || || ||||| |||||||| | Sbjct 73590 TGGTGGCTTTCGCCGCCGTGGAGGGGATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCT 73531 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||| |||||| | || || ||||| || ||||| Sbjct 73530 GGCTGAAGAAGAGGGGCCTGATGCCGGGCCTGAC 73497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740997719876120